RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 GATA4P43694 442 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 MTNR1AP48039 350 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 SEC61A1P61619 476 aaKnown RBP11.01□□□□□ -0.65
RTN3-213ENST00000543552 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.01□□□□□ -0.65
RTN3-213ENST00000543552 FOXL1Q12952 345 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 GK2Q14410 553 aaPredicted RBP11.01□□□□□ -0.65
RTN3-213ENST00000543552 KCNJ8Q15842 424 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 KRTAP27-1Q3LI81 207 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 CFAP77Q6ZQR2 320 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 DOK3Q7L591 496 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 MRPL21Q7Z2W9 205 aaKnown RBP11.01□□□□□ -0.65
RTN3-213ENST00000543552 KLBQ86Z14 1044 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 LINC00346Q8IVM7 164 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 ZDHHC21Q8IVQ6 265 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 SIGLECL1Q8N7X8 197 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 ZDHHC22Q8N966 263 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 SDR9C7Q8NEX9 313 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 PROKR2Q8NFJ6 384 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 OR52E2Q8NGJ4 325 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 OR2T4Q8NH00 348 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 ZNF420Q8TAQ5 688 aaPredicted RBP11.01□□□□□ -0.65
RTN3-213ENST00000543552 CDRT15Q96T59 188 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 PLA2G12AQ9BZM1 189 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 WDR76Q9H967 626 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 ESM1Q9NQ30 184 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 PPIAL4AQ9Y536 164 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 CDH10Q9Y6N8 788 aa11.01□□□□□ -0.65
RTN3-213ENST00000543552 OR6C68A6NDL8 312 aa11□□□□□ -0.65
RTN3-213ENST00000543552 M0R135 149 aa11□□□□□ -0.65
RTN3-213ENST00000543552 CYB5R3P00387 301 aaPredicted RBP11□□□□□ -0.65
RTN3-213ENST00000543552 WNT2P09544 360 aa11□□□□□ -0.65
RTN3-213ENST00000543552 PRTN3P24158 256 aa11□□□□□ -0.65
RTN3-213ENST00000543552 GGT2P36268 569 aa11□□□□□ -0.65
RTN3-213ENST00000543552 PITPNBP48739 271 aa11□□□□□ -0.65
RTN3-213ENST00000543552 ZNF404Q494X3 552 aa11□□□□□ -0.65
RTN3-213ENST00000543552 CLEC12AQ5QGZ9 265 aa11□□□□□ -0.65
RTN3-213ENST00000543552 PGBD2Q6P3X8 592 aa11□□□□□ -0.65
RTN3-213ENST00000543552 Q8TCH9 128 aa11□□□□□ -0.65
RTN3-213ENST00000543552 SLC25A28Q96A46 364 aa11□□□□□ -0.65
RTN3-213ENST00000543552 ZNF799Q96GE5 643 aa11□□□□□ -0.65
RTN3-213ENST00000543552 MS4A7Q9GZW8 240 aaPredicted RBP11□□□□□ -0.65
RTN3-213ENST00000543552 OPA3Q9H6K4 179 aa11□□□□□ -0.65
RTN3-213ENST00000543552 TMEM165Q9HC07 324 aa11□□□□□ -0.65
RTN3-213ENST00000543552 TRIM36Q9NQ86 728 aa11□□□□□ -0.65
RTN3-213ENST00000543552 CD300AQ9UGN4 299 aa11□□□□□ -0.65
RTN3-213ENST00000543552 ARL2BPQ9Y2Y0 163 aa11□□□□□ -0.65
RTN3-213ENST00000543552 IGHV2-70DA0A0C4DH43 119 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 H0YL77 283 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 PHYHO14832 338 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 CD200P41217 278 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 PAX8Q06710 450 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 MZT1Q08AG7 82 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 BAMBIQ13145 260 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 HNRNPA0Q13151 305 aaKnown RBP10.99□□□□□ -0.65
RTN3-213ENST00000543552 OR8G1Q15617 311 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 AWAT1Q58HT5 328 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 SLC35F1Q5T1Q4 408 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 DRAM2Q6UX65 266 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 DCDC5Q6ZRR9 648 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 DEFB107AQ8IZN7 70 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 PARP8Q8N3A8 854 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 PLPP7Q8NBV4 271 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 RAB40AQ8WXH6 277 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 SLCO4A1Q96BD0 722 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 TMEM246Q9BRR3 403 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 TRIM15Q9C019 465 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 FN3KQ9H479 309 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 FN3KRPQ9HA64 309 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 TBC1D23Q9NUY8 699 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 KIF17Q9P2E2 1029 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 CLN8Q9UBY8 286 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 ZNF69Q9UC07 566 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 BAIAP2Q9UQB8 552 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 ARHGAP32A7KAX9 2087 aa10.99□□□□□ -0.65
RTN3-213ENST00000543552 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.98□□□□□ -0.65
RTN3-213ENST00000543552 DNAJC9-AS1A6NH13 148 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 CLDN34H7C241 214 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 TNFRSF11BO00300 401 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 SPRY1O43609 319 aaPredicted RBP10.98□□□□□ -0.65
RTN3-213ENST00000543552 GMDSO60547 372 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 CCNB2O95067 398 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 ZNF205O95201 554 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 HLA-DPB1P04440 258 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 HKR1P10072 659 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 CD80P33681 288 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 MSX2P35548 267 aaPredicted RBP10.98□□□□□ -0.65
RTN3-213ENST00000543552 NPY4RP50391 375 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 HMGA2P52926 109 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 BLVRAP53004 296 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 TAF13Q15543 124 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 RSPO1Q2MKA7 263 aaPredicted RBP10.98□□□□□ -0.65
RTN3-213ENST00000543552 TUSC1Q2TAM9 212 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 KLF17Q5JT82 389 aaPredicted RBP10.98□□□□□ -0.65
RTN3-213ENST00000543552 RASSF6Q6ZTQ3 369 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 C9orf139Q6ZV77 190 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 ARHGAP24Q8N264 748 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 SPERTQ8NA61 448 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 UPRTQ96BW1 309 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 MAP6Q96JE9 813 aa10.98□□□□□ -0.65
RTN3-213ENST00000543552 COPS4Q9BT78 406 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms