RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 HIST2H3AQ71DI3 136 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 ZIC4Q8N9L1 334 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 OR4D6Q8NGJ1 314 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 NABP1Q96AH0 204 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 SORCS2Q96PQ0 1159 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 NKX3-1Q99801 234 aaPredicted RBP12.18□□□□□ -0.46
RTN3-210ENST00000540798 ZFP64Q9NPA5 681 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 ATPIF1Q9UII2 106 aa12.18□□□□□ -0.46
RTN3-210ENST00000540798 TRAV18A0A075B6X5 111 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 A0A1W2PNU3 283 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 SMLR1H3BR10 107 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 TSPAN4O14817 238 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 SYT7O43581 403 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 HPXP02790 462 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 CXCL3P19876 107 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 BDKRB2P30411 391 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 QRFPP83859 136 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 BEST3Q8N1M1 668 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 FAM109AQ8N4B1 249 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 HYLS1Q96M11 299 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ZNF385AQ96PM9 386 aaKnown RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 ATG5Q9H1Y0 275 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 MRPS18CQ9Y3D5 142 aaKnown RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 DCDC2BA2VCK2 349 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 LRRC3CA6NJW4 275 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 GJE1A6NN92 205 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 DLL1O00548 723 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 TERTO14746 1132 aaKnown RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 IGLV3-1P01715 115 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 LILRB2Q8N423 598 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 OR1M1Q8NGA1 313 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 PSMF1Q92530 271 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 UCN2Q96RP3 112 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 SF3B5Q9BWJ5 86 aaKnown RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 GON7Q9BXV9 100 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 SRXN1Q9BYN0 137 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 METTL17Q9H7H0 456 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 NOX3Q9HBY0 568 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 WDFY4Q6ZS81 3184 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 CDX4O14627 284 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 RER1O15258 196 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 FABP7O15540 132 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ANXA3P12429 323 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 SDHBP21912 280 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ANOS1P23352 680 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 PRSS3P35030 304 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 CSNK1A1P48729 337 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 VEGFCP49767 419 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ZP1P60852 638 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 GUCA2AQ02747 115 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ZMYND11Q15326 602 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 ANGPT1Q15389 498 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 PCGF3Q3KNV8 242 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 B3GNTL1Q67FW5 361 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 FAAP20Q6NZ36 180 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 GLDNQ6ZMI3 551 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 IDO2Q6ZQW0 420 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 CLEC1AQ8NC01 280 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 OR8B12Q8NGG6 310 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 KCNE4Q8WWG9 221 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 INTS12Q96CB8 462 aaKnown RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 NELFAQ9H3P2 528 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 SCPEP1Q9HB40 452 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 NPDC1Q9NQX5 325 aaPredicted RBP12.17□□□□□ -0.46
RTN3-210ENST00000540798 PTTG3PQ9NZH4 202 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 FBLN5Q9UBX5 448 aa12.17□□□□□ -0.46
RTN3-210ENST00000540798 P04436 131 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 IL5P05113 134 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 GRB2P62993 217 aaKnown RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 ENDOGQ14249 297 aaKnown RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 ACER2Q5QJU3 275 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 METTL11BQ5VVY1 283 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 GGNQ86UU5 652 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 OR4C16Q8NGL9 310 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 JSRP1Q96MG2 331 aaPredicted RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 ZNF416Q9BWM5 594 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 COL25A1Q9BXS0 654 aaPredicted RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 OR10A4Q9H209 315 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 CNTD2Q9H8S5 307 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 TMEM138Q9NPI0 162 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 ZNF319Q9P2F9 582 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 POLR1DQ9Y2S0 133 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 BDP1A6H8Y1 2624 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 MED12Q93074 2177 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 IGHV3-15A0A0B4J1V0 119 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 TNFSF11O14788 317 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 SMAD9O15198 467 aaKnown RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 MSR1P21757 451 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 FAUP35544 74 aaKnown RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 ZNF121P58317 390 aaPredicted RBP12.16□□□□□ -0.46
RTN3-210ENST00000540798 C9orf62Q8N4C0 152 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 JAGN1Q8N5M9 183 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 OR51E1Q8TCB6 317 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 SEH1LQ96EE3 360 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 P4HTMQ9NXG6 502 aa12.16□□□□□ -0.46
RTN3-210ENST00000540798 A0A1B0GVI7 797 aa12.15□□□□□ -0.46
RTN3-210ENST00000540798 ARPC1BO15143 372 aaKnown RBP12.15□□□□□ -0.46
RTN3-210ENST00000540798 RAC3P60763 192 aa12.15□□□□□ -0.46
RTN3-210ENST00000540798 CSRP2Q16527 193 aa12.15□□□□□ -0.46
RTN3-210ENST00000540798 SLC25A25Q6KCM7 469 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 175.7 ms