RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 SOX21Q9Y651 276 aaPredicted RBP11.8□□□□□ -0.52
SNHG1-213ENST00000540725 V9GYQ6 96 aa11.8□□□□□ -0.52
SNHG1-213ENST00000540725 F5H5K5 113 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 GMNNO75496 209 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 IRF2P14316 349 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 HIST1H1CP16403 213 aaKnown RBP11.79□□□□□ -0.52
SNHG1-213ENST00000540725 GATA4P43694 442 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 SMIM11AP58511 58 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 IL13RA1P78552 427 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 SPIBQ01892 262 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 ECH1Q13011 328 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 GK2Q14410 553 aaPredicted RBP11.79□□□□□ -0.52
SNHG1-213ENST00000540725 RFX4Q33E94 735 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 SLC36A3Q495N2 470 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 RNF148Q8N7C7 305 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 OR2AJ1Q8NGZ0 328 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 OR4K13Q8NH42 304 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CMTM5Q96DZ9 223 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 ATF6BQ99941 703 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 IFT27Q9BW83 186 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 SPAG4Q9NPE6 437 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 ZNF446Q9NWS9 450 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 ADA2Q9NZK5 511 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CLN8Q9UBY8 286 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 KIR2DS1A0A191URI9 304 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 GADD45GO95257 159 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 LCATP04180 440 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 TRAP1Q12931 704 aaKnown RBP11.79□□□□□ -0.52
SNHG1-213ENST00000540725 MALLQ13021 153 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 MAB21L1Q13394 359 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 WDR25Q64LD2 544 aaPredicted RBP11.79□□□□□ -0.52
SNHG1-213ENST00000540725 LYPD2Q6UXB3 125 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 DCDC5Q6ZRR9 648 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 NAA40Q86UY6 237 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 ZBTB46Q86UZ6 589 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CELF2-AS1Q8N7Q2 184 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 OR11L1Q8NGX0 322 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 Q8TCH9 128 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 NUDT16L1Q9BRJ7 211 aaKnown RBP11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CDADC1Q9BWV3 514 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 FN3KQ9H479 309 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CYB5R1Q9UHQ9 305 aa11.79□□□□□ -0.52
SNHG1-213ENST00000540725 CMYA5Q8N3K9 4069 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 MDFIC2A0A1B0GVS7 189 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 OR6C68A6NDL8 312 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 POM121CA8CG34 1229 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 PHYHO14832 338 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 KCNAB3O43448 404 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 OR10H3O60404 316 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 FAM20BO75063 409 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 HLA-DQA2P01906 255 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 SEMG1P04279 462 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 NOS3P29474 1203 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 GGT2P36268 569 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 CD200P41217 278 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 RAD23AP54725 363 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 HSP90B2PQ58FF3 399 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 CLEC12AQ5QGZ9 265 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 PRAMEF6Q5VXH4 476 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 PGAP1Q75T13 922 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 FITM2Q8N6M3 262 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 C19orf18Q8NEA5 215 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 SDR9C7Q8NEX9 313 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 TAF15Q92804 592 aaKnown RBP eCLIP11.78□□□□□ -0.52
SNHG1-213ENST00000540725 ERGIC1Q969X5 290 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 SLCO4A1Q96BD0 722 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 PYURFQ96I23 114 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 MYLK2Q9H1R3 596 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 GORASP2Q9H8Y8 452 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 PNRC2Q9NPJ4 139 aaKnown RBP11.78□□□□□ -0.52
SNHG1-213ENST00000540725 UFSP2Q9NUQ7 469 aa11.78□□□□□ -0.52
SNHG1-213ENST00000540725 VWFP04275 2813 aa11.77□□□□□ -0.52
SNHG1-213ENST00000540725 IDH3BO43837 385 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 GSSP48637 474 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 TPTEP56180 551 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 FGF12P61328 243 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 OR8G1Q15617 311 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 MPPED2Q15777 294 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 C16orf87Q6PH81 154 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 BRD3OSQ6XYD6 125 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 ZNF841Q6ZN19 808 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 SPATC1Q76KD6 591 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 MRPL21Q7Z2W9 205 aaKnown RBP11.77□□□□□ -0.53
SNHG1-213ENST00000540725 OR10S1Q8NGN2 331 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 SPRYD4Q8WW59 207 aaPredicted RBP11.77□□□□□ -0.53
SNHG1-213ENST00000540725 MRPL22Q9NWU5 206 aaKnown RBP11.77□□□□□ -0.53
SNHG1-213ENST00000540725 TMCC3Q9ULS5 477 aa11.77□□□□□ -0.53
SNHG1-213ENST00000540725 C22orf46C9J442 243 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 M0R135 149 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 HOXA3O43365 443 aaPredicted RBP11.76□□□□□ -0.53
SNHG1-213ENST00000540725 ENSAO43768 121 aaKnown RBP11.76□□□□□ -0.53
SNHG1-213ENST00000540725 MDKP21741 143 aaPredicted RBP11.76□□□□□ -0.53
SNHG1-213ENST00000540725 CA6P23280 308 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 PRDX6P30041 224 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 IFNGR2P38484 337 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 PSMB10P40306 273 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 HOXA4Q00056 320 aaPredicted RBP11.76□□□□□ -0.53
SNHG1-213ENST00000540725 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.76□□□□□ -0.53
SNHG1-213ENST00000540725 DEFB112Q30KQ8 113 aa11.76□□□□□ -0.53
SNHG1-213ENST00000540725 SLC35F1Q5T1Q4 408 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms