RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CXCR4P61073 352 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 MAXP61244 160 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 ERVK-16P61578 105 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 RHOAP61586 193 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 HERV-K104P63124 156 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 UBE2IP63279 158 aaKnown RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 SEMG2Q02383 582 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 FGL1Q08830 312 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 FZD2Q14332 565 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 MESDQ14696 234 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 FAM189A2Q15884 450 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CDKN3Q16667 212 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 DUSP5Q16690 384 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PPP1R3AQ16821 1122 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 KCTD19Q17RG1 926 aaPredicted RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 MICBQ29980 383 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 BCL7AQ4VC05 210 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CT45A2Q5DJT8 189 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PRAMEF5Q5TYX0 476 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PRAMEF6Q5VXH4 476 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PDPK2PQ6A1A2 396 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 LCN8Q6JVE9 175 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 C5orf46Q6UWT4 87 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 Q6ZR54 194 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 RFLNAQ6ZTI6 216 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 ERASQ7Z444 233 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 SNX29P2Q8IUI4 249 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 NAXDQ8IW45 347 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 KATNAL2Q8IYT4 538 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 LRRC75A-AS1Q8N1F1 130 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 ZNF786Q8N393 782 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 SLC25A45Q8N413 288 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 C9orf62Q8N4C0 152 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 BBS1Q8NFJ9 593 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 OR6M1Q8NGM8 313 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 SAP25Q8TEE9 199 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PIH1D2Q8WWB5 315 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 DEDD2Q8WXF8 326 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 EMG1Q92979 244 aaKnown RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 HGDQ93099 445 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 C11orf52Q96A22 123 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 TADA1Q96BN2 335 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 SGTBQ96EQ0 304 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 TSNARE1Q96NA8 513 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 MCCC1Q96RQ3 725 aaPredicted RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 RAB40CQ96S21 281 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 C12orf57Q99622 126 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 KCTD14Q9BQ13 255 aaPredicted RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 SEC22CQ9BRL7 303 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 TMEM43Q9BTV4 400 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 GSDMCQ9BYG8 508 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 SLC17A9Q9BYT1 436 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 TCEAL2Q9H3H9 227 aaPredicted RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 RIMS4Q9H426 269 aaPredicted RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 DUSP21Q9H596 190 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 GNB4Q9HAV0 340 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 MCCC2Q9HCC0 563 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 IL1RAPQ9NPH3 570 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 NLGN3Q9NZ94 848 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PTTG3PQ9NZH4 202 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CCDC59Q9P031 241 aaKnown RBP2.75□□□□□ -1.97
USP48-215ENST00000534705 ERVK-18Q9QC07 812 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 ABCD2Q9UBJ2 740 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CTSFQ9UBX1 484 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CHRNA9Q9UGM1 479 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 CYB5R1Q9UHQ9 305 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 ZNF229Q9UJW7 825 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 EMCNQ9ULC0 261 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 TP53TG3Q9ULZ0 132 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 NDUFAF1Q9Y375 327 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 PPIL1Q9Y3C6 166 aa2.75□□□□□ -1.97
USP48-215ENST00000534705 FREM3P0C091 2139 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ZFYVE26Q68DK2 2539 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 hCG_1818297A0A087WSY0 165 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SPTY2D1-AS1A0A0U1RR47 76 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 hCG_38984A0A1B0GV85 526 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 A0A1W2PRG6 482 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 FAM159BA6NKW6 160 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ZNF729A6NN14 1252 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 EFCAB7A8K855 629 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 A8MVM7 634 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ZNF99A8MXY4 864 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 ZNF879B4DU55 563 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 LOC110117498-PIK3R3F6TDL0 507 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 DNASE2O00115 360 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 UPK1AO00322 258 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SYT7O43581 403 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PSTPIP1O43586 416 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PLIN3O60664 434 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NIPSNAP2O75323 286 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NDUFS6O75380 124 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 CTAG2O75638 210 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 RBBP9O75884 186 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NPPAP01160 153 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 HLA-DQB1P01920 261 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CDK1P06493 297 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SMIM6P0DI80 62 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 HSD17B1P14061 328 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CD1EP15812 388 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CPN2P22792 545 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms