RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 MMP25Q9NPA2 562 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 KCNG2Q9UJ96 466 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 TEX13DA0A0J9YY54 714 aaPredicted RBP12.71□□□□□ -0.37
USP48-213ENST00000529637 XKRYO14609 159 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 RENP00797 406 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 LPAR6P43657 344 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 SQSTM1Q13501 440 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 KLHL26Q53HC5 615 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 DHRS11Q6UWP2 260 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 CDC20BQ86Y33 519 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 ACBD4Q8NC06 268 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 FN3KRPQ9HA64 309 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 LPAR3Q9UBY5 353 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 A6NLC8 198 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 OR6A2O95222 327 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 HTR3BO95264 441 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 PNPP00491 289 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 OR8U8P0C7N1 319 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 FOLR2P14207 255 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 IL12BP29460 328 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 HSD17B7P56937 341 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 FUT7Q11130 342 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 C1QL3Q5VWW1 255 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 FAM166AQ6J272 317 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 PAPD4Q6PIY7 484 aaKnown RBP12.71□□□□□ -0.38
USP48-213ENST00000529637 ZNF615Q8N8J6 731 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 EXD3Q8N9H8 876 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 AKR1E2Q96JD6 320 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 ZNF285Q96NJ3 590 aa12.71□□□□□ -0.38
USP48-213ENST00000529637 C8orf33Q9H7E9 229 aaPredicted RBP12.71□□□□□ -0.38
USP48-213ENST00000529637 MYOZ1Q9NP98 299 aaPredicted RBP12.71□□□□□ -0.38
USP48-213ENST00000529637 ABCA7Q8IZY2 2146 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 SERPINA5P05154 406 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 PPICP45877 212 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 CAPZBP47756 277 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 HOXB13Q92826 284 aaPredicted RBP12.7□□□□□ -0.38
USP48-213ENST00000529637 IP6K3Q96PC2 410 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 SEC61A2Q9H9S3 476 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 ATG2AQ2TAZ0 1938 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 hCG_1809904A0A1W2PP81 198 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 A0A1W2PR64 198 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 A0A1W2PRV1 198 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 ALOX5APP20292 161 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 S100PP25815 95 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 CAV2P51636 162 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 ADAM8P78325 824 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 ZP2Q05996 745 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 PMPCAQ10713 525 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 ATG4DQ86TL0 474 aaPredicted RBP12.7□□□□□ -0.38
USP48-213ENST00000529637 METTL21AQ8WXB1 218 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 C4orf45Q96LM5 186 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 PHB2Q99623 299 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 CMKLR1Q99788 373 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 C20orf24Q9BUV8 137 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 EGLN1Q9GZT9 426 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 RPS10P5Q9NQ39 176 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 SMCO4Q9NRQ5 59 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 OR5AC2Q9NZP5 309 aa12.7□□□□□ -0.38
USP48-213ENST00000529637 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 TMEM212A6NML5 194 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 LY86O95711 162 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 HLA-GP17693 338 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 NME2P22392 152 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 SCAND1P57086 179 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 ZNF585AQ6P3V2 769 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 PPP1R3BQ86XI6 285 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 TAAR8Q969N4 342 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 TBL1XR1Q9BZK7 514 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 HIF3AQ9Y2N7 669 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 CLDN16Q9Y5I7 305 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 RCC1P18754 421 aaPredicted RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 OR2B8PP59922 312 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 TOMM34Q15785 309 aaPredicted RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 KRBOX4Q5JUW0 171 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 NCMAPQ5T1S8 102 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 CDPF1Q6NVV7 123 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 MARCH3Q86UD3 253 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 NUDCD2Q8WVJ2 157 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 PARP12Q9H0J9 701 aaKnown RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 TAS2R4Q9NYW5 299 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 EFSO43281 561 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 ADAP1O75689 374 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 IL2RAP01589 272 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 SPARCP09486 303 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 AGAP20933 346 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 HTR2CP28335 458 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 RPS4XP62701 263 aaKnown RBP12.69□□□□□ -0.38
USP48-213ENST00000529637 EGR4Q05215 589 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 SKP2Q13309 424 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP48-213ENST00000529637 MESTQ5EB52 335 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 C1orf189Q5VU69 101 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 IL34Q6ZMJ4 242 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 SHISA6Q6ZSJ9 500 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 MDGA2Q7Z553 956 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 ZNF524Q96C55 264 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 DCBLD2Q96PD2 775 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 TSPAN32Q96QS1 320 aa12.69□□□□□ -0.38
USP48-213ENST00000529637 INTS14Q96SY0 518 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms