RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 LRPPRCP42704 1394 aaKnown RBP2.84□□□□□ -1.96
CD44-223ENST00000526553 ANKRD50Q9ULJ7 1429 aa2.84□□□□□ -1.96
CD44-223ENST00000526553 MYOM2P54296 1465 aa2.84□□□□□ -1.96
CD44-223ENST00000526553 IQGAP3Q86VI3 1631 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 TRBV6-6A0A0A6YYG2 114 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 A0A1B0GUH1 482 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 A0A1W2PPV4 95 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 NKX2-6A6NCS4 301 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 HIDE1A8MVS5 230 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 H0YHG0 523 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 RAD51CO43502 376 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 FARS2O95363 451 aaKnown RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 OMGP23515 440 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 NUP62P37198 522 aaPredicted RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 HMGCS1Q01581 520 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ZNF33AQ06730 810 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ZNF726P1Q15940 193 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 GUCA2BQ16661 112 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 TPTE2P1Q5T6R2 138 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 NPSR1Q6W5P4 371 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 STRADAQ7RTN6 431 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 MRPL21Q7Z2W9 205 aaKnown RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 ZNF786Q8N393 782 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 LRRC75AQ8NAA5 344 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ACTRT1Q8TDG2 376 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 TMEM230Q96A57 120 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ASB9Q96DX5 294 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 MICU1Q9BPX6 476 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 DEFB129Q9H1M3 183 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 XKR8Q9H6D3 395 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 TMEM38AQ9H6F2 299 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 MRM3Q9HC36 420 aaKnown RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 RCL1Q9Y2P8 373 aaKnown RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 UBN2Q6ZU65 1347 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 NUP155O75694 1391 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ZNFX1Q9P2E3 1918 aaKnown RBP2.83□□□□□ -1.96
CD44-223ENST00000526553 PXDNQ92626 1479 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 SLIT2O94813 1529 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 ADGRB2O60241 1585 aa2.83□□□□□ -1.96
CD44-223ENST00000526553 KIF1AQ12756 1690 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 NUP188Q5SRE5 1749 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 ABCA3Q99758 1704 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 IFT172Q9UG01 1749 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 MTCL1Q9Y4B5 1905 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 KMOO15229 486 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 SNAI2O43623 268 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 FLOT1O75955 427 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 MOSP00540 346 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 MBP02144 154 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 TPM1P09493 284 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 STAG3L2P0CL84 134 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 TUBG1P23258 451 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 BMI1P35226 326 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 GPR1P46091 355 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 RPS10P46783 165 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 ETV1P50549 477 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 CCNG1P51959 295 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 VSX2P58304 361 aaPredicted RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 HERVK_113P61574 105 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 GGTLC2Q14390 218 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 PON3Q15166 354 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 TRMT5Q32P41 509 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 HNRNPA1L2Q32P51 320 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 AADACL4Q5VUY2 407 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 SPECC1LQ69YQ0 1117 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 ZNF493Q6ZR52 646 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 ZNF621Q6ZSS3 439 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 MBOAT2Q6ZWT7 520 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 FAM122BQ7Z309 247 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 OR10J6PQ8NGY7 276 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 PIH1D2Q8WWB5 315 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 RAB1CQ92928 201 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 CREB3L1Q96BA8 519 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 ZNF707Q96C28 371 aaPredicted RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 STARD4Q96DR4 205 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 GALNT14Q96FL9 552 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 CALN1Q9BXU9 219 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 PATZ1Q9HBE1 687 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 CD209Q9NNX6 404 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 TUBG2Q9NRH3 451 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 FAM49BQ9NUQ9 324 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 IFNKQ9P0W0 207 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 CD84Q9UIB8 345 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 TRAPPC4Q9Y296 219 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 YARS2Q9Y2Z4 477 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 F11RQ9Y624 299 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 COMMD3-BMI1R4GMX3 469 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 VPS8Q8N3P4 1428 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 ADGRL2O95490 1459 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 RREB1Q92766 1687 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 NRAPQ86VF7 1730 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 FMN2Q9NZ56 1722 aa2.82□□□□□ -1.96
CD44-223ENST00000526553 COL14A1Q05707 1796 aaKnown RBP2.82□□□□□ -1.96
CD44-223ENST00000526553 MYO10Q9HD67 2058 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 A0A1B0GW55 424 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 LAD1O00515 517 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 ZBTB5O15062 677 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 HPRT1P00492 218 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 CSTAP01040 98 aa2.81□□□□□ -1.96
CD44-223ENST00000526553 IVLP07476 585 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms