RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SLC15A1P46059 708 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 SELENOVP59797 346 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 EFNB1P98172 346 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 SRSF2Q01130 221 aaKnown RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 TAF13Q15543 124 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 AADACL4Q5VUY2 407 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 RFPL4BQ6ZWI9 263 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 MEPCEQ7L2J0 689 aaKnown RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 SLC16A9Q7RTY1 509 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 DPY19L4Q7Z388 723 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 ZNF101Q8IZC7 436 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 OR1J1Q8NGS3 322 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 SLC7A6Q92536 515 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 RFKQ969G6 155 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 SLAMF6Q96DU3 332 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 MAP6Q96JE9 813 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 CNN2Q99439 309 aaKnown RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 TEAD3Q99594 435 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 COPS4Q9BT78 406 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 DYNLRB1Q9NP97 96 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 PNRC2Q9NPJ4 139 aaKnown RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 DDX28Q9NUL7 540 aaKnown RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 TBCCD1Q9NVR7 557 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 GRIP1Q9Y3R0 1128 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 LOC100130705A0A1B0GUX0 176 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 A0A1W2PPW3 197 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 SNTNA6NMZ2 147 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 E9PQ18 207 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 H3BSA7 217 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 HAX1O00165 279 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 SLC16A6O15403 523 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 LYNP07948 512 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 PSKH1P11801 424 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 DAOP14920 347 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 TUBG1P23258 451 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 GCH1P30793 250 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 HTR1FP30939 366 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 EVX1P49640 407 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 AQP4P55087 323 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 TPTEP56180 551 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 KLF3P57682 345 aaPredicted RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 PPP1CBP62140 327 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 SNRPGP62308 76 aaKnown RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 GRB2P62993 217 aaKnown RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 TMED1Q13445 227 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 ZNF718Q3SXZ3 478 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 MEDAGQ5VYS4 303 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 BCDIN3DQ7Z5W3 292 aaKnown RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 OR5L1Q8NGL2 311 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 OTOSQ8NHW6 89 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 SYNPRQ8TBG9 265 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 ST7LQ8TDW4 575 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 NEU4Q8WWR8 484 aaPredicted RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 APOBEC3DQ96AK3 386 aaPredicted RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 MNTQ99583 582 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 APOL4Q9BPW4 351 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 MRPL37Q9BZE1 423 aaKnown RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 YIPF3Q9GZM5 350 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 Q9H521 79 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 TUBG2Q9NRH3 451 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 CENPMQ9NSP4 180 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 FAM118AQ9NWS6 357 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 HAO2Q9NYQ3 351 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 DNAJC27Q9NZQ0 273 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 WARS2Q9UGM6 360 aaKnown RBP8.67□□□□□ -1.02
VPS28-204ENST00000526054 GPR160Q9UJ42 338 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 LAMP5Q9UJQ1 280 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.67□□□□□ -1.023e-6■□□□□ 9.1
VPS28-204ENST00000526054 TMEM14AQ9Y6G1 99 aa8.67□□□□□ -1.02
VPS28-204ENST00000526054 LRP5LA4QPB2 252 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 F5H5K5 113 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 M0R135 149 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 M0R233 179 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 PHYHO14832 338 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 NGFP01138 241 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 APOC1P02654 83 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 MRPL3P09001 348 aaKnown RBP8.66□□□□□ -1.02
VPS28-204ENST00000526054 DBHP09172 617 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 ACSM4P0C7M7 580 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 ZNF250P15622 560 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 GIFP27352 417 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 HSD11B1P28845 292 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 SLC6A9P48067 706 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 CHN2P52757 468 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 ERVS71-1P61550 626 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 POU4F2Q12837 409 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 MOGQ16653 247 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 CR1LQ2VPA4 569 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 KRTAP27-1Q3LI81 207 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 TTC23Q5W5X9 447 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 DRAM2Q6UX65 266 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 SPATC1Q76KD6 591 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 RHOUQ7L0Q8 258 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 DHRSXQ8N5I4 330 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 SETD9Q8NE22 299 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 OR51G2Q8NGK0 314 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 OR10S1Q8NGN2 331 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 SLC25A40Q8TBP6 338 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 THEM6Q8WUY1 208 aa8.66□□□□□ -1.02
VPS28-204ENST00000526054 SNX33Q8WV41 574 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms