RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SLC35F2Q8IXU6 374 aa12.21□□□□□ -0.45
NUP54-216ENST00000514901 DHRSXQ8N5I4 330 aa12.21□□□□□ -0.45
NUP54-216ENST00000514901 ZNF283Q8N7M2 679 aa12.21□□□□□ -0.45
NUP54-216ENST00000514901 OR2T27Q8NH04 317 aa12.21□□□□□ -0.45
NUP54-216ENST00000514901 MROQ9BYG7 248 aa12.21□□□□□ -0.45
NUP54-216ENST00000514901 MYOZ1Q9NP98 299 aaPredicted RBP12.21□□□□□ -0.45
NUP54-216ENST00000514901 MYEF2Q9P2K5 600 aaKnown RBP12.21□□□□□ -0.45
NUP54-216ENST00000514901 NKX1-2Q9UD57 310 aaPredicted RBP12.21□□□□□ -0.45
NUP54-216ENST00000514901 ACOD1A6NK06 481 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 C17orf100A8MU93 164 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 ZNF670-ZNF695F2Z2N8 137 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 TIMM8AO60220 97 aaPredicted RBP12.2□□□□□ -0.46
NUP54-216ENST00000514901 ENTPD6O75354 484 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 CSF3P09919 207 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 GABRB1P18505 474 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 DCTDP32321 178 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 MTNR1AP48039 350 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 CX3CR1P49238 355 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 HCCSP53701 268 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 ROM1Q03395 351 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 EGR3Q06889 387 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 IL18R1Q13478 541 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 RIPK1Q13546 671 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 NAA40Q86UY6 237 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 TGIF2LYQ8IUE0 185 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 KRTAP1-3Q8IUG1 177 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 ENTHD1Q8IYW4 607 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 ZNF679Q8IYX0 411 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 SETD9Q8NE22 299 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 OR52H1Q8NGJ2 320 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 OR51G2Q8NGK0 314 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 CYGBQ8WWM9 190 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 SORCS2Q96PQ0 1159 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 DIRC2Q96SL1 478 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 AMELYQ99218 206 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 VCX3BQ9H321 246 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 POFUT1Q9H488 388 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 OPA3Q9H6K4 179 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 NKIRAS2Q9NYR9 191 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 PTTG3PQ9NZH4 202 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 PURGQ9UJV8 347 aaKnown RBP12.2□□□□□ -0.46
NUP54-216ENST00000514901 PCDHGB1Q9Y5G3 927 aa12.2□□□□□ -0.46
NUP54-216ENST00000514901 H0YAE9 185 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 H0YJX3 145 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 XRCC2O43543 280 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 SSX4O60224 188 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 NDUFS7O75251 213 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 NAT2P11245 290 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 CFL1P23528 166 aaKnown RBP12.19□□□□□ -0.46
NUP54-216ENST00000514901 ZNF81P51508 661 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 MMP15P51511 669 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 MAD2L1BPQ15013 274 aaPredicted RBP12.19□□□□□ -0.46
NUP54-216ENST00000514901 CLEC12BQ2HXU8 276 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 FAM209AQ5JX71 171 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 ZNF322Q6U7Q0 402 aaPredicted RBP12.19□□□□□ -0.46
NUP54-216ENST00000514901 OR8B4Q96RC9 309 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 MYCBPQ99417 103 aaPredicted RBP12.19□□□□□ -0.46
NUP54-216ENST00000514901 OR10A2Q9H208 303 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 ZDHHC8Q9ULC8 765 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 KLHDC2Q9Y2U9 406 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 HSPE1-MOB4S4R3N1 261 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 VPS13CQ709C8 3753 aa12.19□□□□□ -0.46
NUP54-216ENST00000514901 F8P00451 2351 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 ANXA2P07355 339 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 ADH4P08319 380 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 CAPGP40121 348 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 RIDAP52758 137 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 ZNF121P58317 390 aaPredicted RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 CXCR4P61073 352 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 ADARB1P78563 741 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 MRPS11P82912 194 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 GK2Q14410 553 aaPredicted RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 HLXQ14774 488 aaPredicted RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 SNAI3Q3KNW1 292 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 ALKBH6Q3KRA9 238 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 ZNF691Q5VV52 312 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 CLEC2AQ6UVW9 174 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 LRRN1Q6UXK5 716 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 PGAP1Q75T13 922 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 MRPL21Q7Z2W9 205 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 ZCCHC24Q8N2G6 241 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 WFDC11Q8NEX6 87 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 RNFT2Q96EX2 444 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 RHNO1Q9BSD3 238 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 ADI1Q9BV57 179 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 REPIN1Q9BWE0 567 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 RGCCQ9H4X1 137 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 COPS3Q9UNS2 423 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 RPL36Q9Y3U8 105 aaKnown RBP12.18□□□□□ -0.46
NUP54-216ENST00000514901 LRP12Q9Y561 859 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 CELSR1Q9NYQ6 3014 aa12.18□□□□□ -0.46
NUP54-216ENST00000514901 HIVEP1P15822 2718 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 LOC390937A0A1W2PQ73 354 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 IQCF6A8MYZ5 107 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 SULT1C4O75897 302 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 SLC2A1P11166 492 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 TNFSF4P23510 183 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 PDLIM4P50479 330 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 PSMA6P60900 246 aaKnown RBP12.17□□□□□ -0.46
NUP54-216ENST00000514901 ACTC1P68032 377 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms