RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PIGMQ9H3S5 423 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 GDF2Q9UK05 429 aaPredicted RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 LRP12Q9Y561 859 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 PCYT1BQ9Y5K3 369 aaPredicted RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 C2CD4DB7Z1M9 353 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 ST8SIA3O43173 380 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 ZNF354AO60765 605 aaPredicted RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 TPPPO94811 219 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 VAMP5O95183 116 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 EML2O95834 649 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 ABCD3P28288 659 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 RNLSQ5VYX0 342 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 CST9LP1Q5W188 147 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 TEX261Q6UWH6 196 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 TMEM92Q6UXU6 159 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 ZAR1Q86SH2 424 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 SUCNR1Q9BXA5 334 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 C1QTNF6Q9BXI9 259 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 FAM234AQ9H0X4 552 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 NECAP2Q9NVZ3 263 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 U3KQ87 197 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 TUSC2O75896 110 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 GLB1P16278 677 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 TBXA2RP21731 343 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 UBE2IP63279 158 aaKnown RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 OR4D9Q8NGE8 314 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 OR1J2Q8NGS2 313 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 RDH5Q92781 318 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 MALSU1Q96EH3 234 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 URGCP-MRPS24S4R325 110 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 SPTBN1Q01082 2364 aaKnown RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 A0A096LPE4 126 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 A0A1W2PPZ6 126 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 OR13C7P0DN81 318 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 FAHP16930 419 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF121P58317 390 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF117Q03924 483 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 HYAL1Q12794 435 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 TESK1Q15569 626 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 PTP4A1Q93096 173 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ST6GAL2Q96JF0 529 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 C4orf45Q96LM5 186 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 MARVELD1Q9BSK0 173 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 MIXL1Q9H2W2 232 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 LANCL2Q9NS86 450 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 OR5V1Q9UGF6 321 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 HS3ST1O14792 307 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ANGPTL7O43827 346 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 GMDSO60547 372 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 GRPP07492 148 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 MSL3P1P0C860 447 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 SRFP11831 508 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF133P52736 654 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 ZIC1Q15915 447 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ATPAF1Q5TC12 328 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 TMEM88Q6PEY1 159 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 OR5AS1Q8N127 324 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 SLC38A9Q8NBW4 561 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 SFT2D1Q8WV19 159 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 CMBLQ96DG6 245 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF629Q9UEG4 869 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 PTPRFP10586 1907 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 SHANK3Q9BYB0 1731 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF705GA8MUZ8 300 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 DUSP2Q05923 314 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 EXT1Q16394 746 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 C1QL3Q5VWW1 255 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 SYT13Q7L8C5 426 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZFP82Q8N141 532 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZBTB44Q8NCP5 570 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 MAP6Q96JE9 813 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 KCNJ15Q99712 375 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 FLVCR1Q9Y5Y0 555 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 NBASA2RRP1 2371 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ANKRD31Q8N7Z5 1873 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 METTL12A8MUP2 240 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF705FA8MVS1 300 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 HSD17B6O14756 317 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 NME2P1O60361 137 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 TPOP07202 933 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF705DP0CH99 300 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 ZNF705BP0CI00 300 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 TAGLNQ01995 201 aaKnown RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 PAN3Q58A45 887 aaKnown RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 UBE2ZQ9H832 354 aaPredicted RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 EXOSC3Q9NQT5 275 aaKnown RBP11.43□□□□□ -0.58
USP53-209ENST00000514665 SERTAD4Q9NUC0 356 aa11.43□□□□□ -0.58
USP53-209ENST00000514665 HMGB3O15347 200 aaKnown RBP11.42□□□□□ -0.58
USP53-209ENST00000514665 OR5H8P0DN80 308 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 PDZK1IP1Q13113 114 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 FZD2Q14332 565 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 BAP18Q8IXM2 172 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 THOC3Q96J01 351 aaKnown RBP11.42□□□□□ -0.58
USP53-209ENST00000514665 KIRREL1Q96J84 757 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 HAO2Q9NYQ3 351 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 EXOGQ9Y2C4 368 aaKnown RBP11.42□□□□□ -0.58
USP53-209ENST00000514665 SPTAN1Q13813 2472 aaKnown RBP11.42□□□□□ -0.58
USP53-209ENST00000514665 NPIPB8E9PQR5 432 aa11.42□□□□□ -0.58
USP53-209ENST00000514665 GLSO94925 669 aaPredicted RBP11.42□□□□□ -0.58
USP53-209ENST00000514665 MGMTP16455 207 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms