RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	KCNG2	Q9UJ96	466 aa		11.23	□□□□□ -0.61
RNF4-215	ENST00000511843	N6AMT1	Q9Y5N5	214 aa		11.23	□□□□□ -0.61
RNF4-215	ENST00000511843	SVEP1	Q4LDE5	3571 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843		F5H5P2	479 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843		J3QW42	95 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	DEAF1	O75398	565 aa	Predicted RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	IFNA2	P01563	188 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	IGHV2-5	P01817	119 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	SLC2A1	P11166	492 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	SELE	P16581	610 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF3	P17036	446 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	HNF1A	P20823	631 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	TNFSF4	P23510	183 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	PRKX	P51817	358 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	DVL1P1	P54792	670 aa	Predicted RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	TPTE	P56180	551 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	GINS1	Q14691	196 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	ERI1	Q8IV48	349 aa	Known RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	OR8G5	Q8NG78	346 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	OR6N2	Q8NGY6	317 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	ST7L	Q8TDW4	575 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	RAB1C	Q92928	201 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	TMEM186	Q96B77	213 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	TIMD4	Q96H15	378 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	DNHD1	Q96M86	4753 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF582	Q96NG8	517 aa	Predicted RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	COPS4	Q9BT78	406 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	OR51V1	Q9H2C8	321 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	NTN4	Q9HB63	628 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	DDX28	Q9NUL7	540 aa	Known RBP	11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	TMEM106B	Q9NUM4	274 aa		11.22	□□□□□ -0.61
RNF4-215	ENST00000511843	IQCF6	A8MYZ5	107 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	PHF1	O43189	567 aa	Predicted RBP	11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	PLPP2	O43688	288 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF205	O95201	554 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	SBK2	P0C263	348 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	OSM	P13725	252 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF92	Q03936	586 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	EIF2B1	Q14232	305 aa	Known RBP	11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	GK3P	Q14409	553 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	TAF13	Q15543	124 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	PCK2	Q16822	640 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	SLC27A4	Q6P1M0	643 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	PLBD1	Q6P4A8	553 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF283	Q8N7M2	679 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	BBS1	Q8NFJ9	593 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	OR51F2	Q8NH61	342 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	DVL3	Q92997	716 aa	Predicted RBP	11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	SPTSSA	Q969W0	71 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	ZMYND19	Q96E35	227 aa	Predicted RBP	11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	MEGF10	Q96KG7	1140 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	INTS14	Q96SY0	518 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	AMELY	Q99218	206 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	ZNF556	Q9HAH1	456 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	PPP1R3C	Q9UQK1	317 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	NPTN	Q9Y639	398 aa		11.21	□□□□□ -0.61
RNF4-215	ENST00000511843	DOCK11	Q5JSL3	2073 aa		11.21	□□□□□ -0.62
RNF4-215	ENST00000511843	ATR	Q13535	2644 aa		11.21	□□□□□ -0.62
RNF4-215	ENST00000511843	SURF4	O15260	269 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	SELENOF	O60613	162 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	IGHV2-70	P01814	119 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	TNFRSF1A	P19438	455 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	GSTT1	P30711	240 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	OTX1	P32242	354 aa	Predicted RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	SRP14	P37108	136 aa	Known RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	MMP16	P51512	607 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	LCN2	P80188	198 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	HOXA4	Q00056	320 aa	Predicted RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	CDK5	Q00535	292 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	MALL	Q13021	153 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	ZMYND11	Q15326	602 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	GLYATL3	Q5SZD4	288 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	SHQ1	Q6PI26	577 aa	Known RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	PGAP1	Q75T13	922 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	CXXC5	Q7LFL8	322 aa	Known RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	MRPL21	Q7Z2W9	205 aa	Known RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	DPY19L4	Q7Z388	723 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	MOGAT3	Q86VF5	341 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	OR13G1	Q8NGZ3	307 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	UTP4	Q969X6	686 aa	Known RBP	11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	RAB39B	Q96DA2	213 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	SIGLEC11	Q96RL6	698 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC30A2	Q9BRI3	323 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	YY1AP1	Q9H869	796 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	GCM1	Q9NP62	436 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	DNAJC27	Q9NZQ0	273 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	KIF17	Q9P2E2	1029 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	IL19	Q9UHD0	177 aa		11.2	□□□□□ -0.62
RNF4-215	ENST00000511843	RNF212B	A8MTL3	300 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	ZNF878	C9JN71	531 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	PRR23D1	E9PI22	279 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843		M0R129	80 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	MITF	O75030	526 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	GLCE	O94923	617 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	CYB5R3	P00387	301 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	PRR23D2	P0DMB1	279 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	ANXA8	P13928	327 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	PAICS	P22234	425 aa	Known RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	NAA10	P41227	235 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms