RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 AHSA1O95433 338 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 AGR2O95994 175 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 CHRNB4P30926 498 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 WNT5AP41221 380 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 KHKP50053 298 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 NCBP2P52298 156 aaKnown RBP eCLIP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR4C11Q6IEV9 310 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF880Q6PDB4 577 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 MED25Q71SY5 747 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RTN4RL1Q86UN2 441 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF676Q8N7Q3 588 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ADPRHL1Q8NDY3 354 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC17A5Q9NRA2 495 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR52A1Q9UKL2 312 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 JTBO76095 146 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 HPRT1P00492 218 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 IL2RAP01589 272 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC35G6P0C7Q6 338 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 JMJD7P0C870 316 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 MPC1LP0DKB6 136 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 C8orf89P0DMQ9 161 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 FUT3P21217 361 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 TUBG1P23258 451 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 PTPRDP23468 1912 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 AK4P27144 223 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 GABRA4P48169 554 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM33P57088 247 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 TBPL1P62380 186 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 Q5PR19 223 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM268Q5VZI3 342 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 ABLIM2Q6H8Q1 611 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 PLPP7Q8NBV4 271 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 OR52N4Q8NGI2 321 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNRF4Q8WWF5 429 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 HIST1H2AAQ96QV6 131 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 ZFP30Q9Y2G7 519 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 MTCH2Q9Y6C9 303 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 LOC102724200A0A096LPH7 203 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 CATP04040 527 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 CKMP06732 381 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 MMP3P08254 477 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC2A5P22732 501 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 PRAMEF14Q5SWL7 426 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 C1orf194Q5T5A4 169 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 FKBP1CQ5VVH2 108 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 CACUL1Q86Y37 369 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 OR4X1Q8NH49 305 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 TNFRSF13CQ96RJ3 184 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 C16orf70Q9BSU1 422 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 SPATC1LQ9H0A9 340 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 CLDND1Q9NY35 253 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 FOXD3Q9UJU5 478 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 KLK13Q9UKR3 277 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 DOCK8Q8NF50 2099 aa10.82□□□□□ -0.68
LIMCH1-213ENST00000511496 HSBP1L1C9JCN9 74 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TAAR5O14804 337 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 DOK2O60496 412 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 CBR3O75828 277 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TACR3P29371 465 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC35A1P78382 337 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SP3Q02447 781 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 COL10A1Q03692 680 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 CLEC12BQ2HXU8 276 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC35D2Q76EJ3 337 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 CHST4Q8NCG5 386 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 LYPD6BQ8NI32 183 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 HLA-CQ95604 372 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 HHIPL1Q96JK4 782 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 GLIPR2Q9H4G4 154 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SRPK3Q9UPE1 567 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 POLR3KQ9Y2Y1 108 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TRBV11-1A0A0K0K1C0 115 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 A6NIZ1 184 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC16A5O15375 505 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 LCATP04180 440 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 CEACAM1P13688 526 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 ATP1B2P14415 290 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 PPM1FP49593 454 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 PRPS1P60891 318 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 RAP1BP61224 184 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 H3F3AP84243 136 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TAF10Q12962 218 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 RAB11BQ15907 218 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 MRGPRFQ96AM1 343 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 BPIFA2Q96DR5 249 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 OR8D2Q9GZM6 311 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 FKBP11Q9NYL4 201 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 IKZF2Q9UKS7 526 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 YBX2Q9Y2T7 364 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 PPIL1Q9Y3C6 166 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 PLPP1O14494 284 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 SCGB1D2O95969 90 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 NPPBP16860 134 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 GLIPR1P48060 266 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TTC9BQ8N6N2 239 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 OR9A4Q8NGU2 314 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM239Q8WW34 195 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 ARHGDIGQ99819 225 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 KXD1Q9BQD3 176 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms