RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KANTRA0A1W2PQU2 76 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ANKUB1A6NFN9 424 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 MASP2O00187 686 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 CDAP32320 146 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 PMPCAQ10713 525 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 H1FNTQ75WM6 255 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ZFP82Q8N141 532 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ARMC10Q8N2F6 343 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 FGGYQ96C11 551 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 OCIAD1Q9NX40 245 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 COMMD9Q9P000 198 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 EMC3Q9P0I2 261 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 SHPKQ9UHJ6 478 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 SLC17A2O00624 439 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 AGPAT2O15120 278 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 HPP00738 406 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ANOS1P23352 680 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 CRABP1P29762 137 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 SFTPDP35247 375 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ROM1Q03395 351 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 OR2W3Q7Z3T1 314 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 NPRL2Q8WTW4 380 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 ZBTB8AQ96BR9 441 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 CRB3Q9BUF7 120 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 PPP4R1LQ9P1A2 415 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 OR52A1Q9UKL2 312 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 LY6G6EA0A0G2JKS1 128 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 IGHV5-10-1A0A0J9YXX1 117 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 KRBOX1C9JBD0 128 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 RAMP1O60894 148 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 MFAP5Q13361 173 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 GUCA2BQ16661 112 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 PHF19Q5T6S3 580 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 TRAPPC6BQ86SZ2 158 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 OR13C8Q8NGS7 320 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 ST7LQ8TDW4 575 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 C2CD4CQ8TF44 421 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 CCDC74BQ96LY2 380 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 METTL7AQ9H8H3 244 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 SRPK3Q9UPE1 567 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 U3KQA8 63 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 A0A1W2PP11 408 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 A0A1W2PPC1 479 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 OR2AT4A6NND4 320 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF814B7Z6K7 855 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 MRPS10P82664 201 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 DHODHQ02127 395 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 CDCP2Q5VXM1 449 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 RAB12Q6IQ22 244 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 FJX1Q86VR8 437 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 KCNK17Q96T54 332 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 PARP12Q9H0J9 701 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 SEC61A2Q9H9S3 476 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 G6PC2Q9NQR9 355 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 MBD2Q9UBB5 411 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 CKLFQ9UBR5 152 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 DNASE2O00115 360 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 HRH1P35367 487 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 DCDP81605 110 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 MYBPHQ13203 477 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 SLC9A3R2Q15599 337 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 FDX2Q6P4F2 183 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF584Q8IVC4 421 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 OR5D18Q8NGL1 313 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 HLA-CQ95604 372 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 CHST11Q9NPF2 352 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 SLC5A6Q9Y289 635 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 R4GMQ9 66 aa14.69□□□□□ -0.06
CCDC88B-210ENST00000494566 WIPF3A6NGB9 483 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 VSTM2BA6NLU5 285 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 MPTX1A8MV57 137 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 FOSL2P15408 326 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 PRKXP51817 358 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 IL13RA1P78552 427 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 STK11Q15831 433 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 TFAP2EQ6VUC0 442 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 OVCH2Q7RTZ1 564 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 KMT5CQ86Y97 462 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 CARFQ8N187 725 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 OR13C9Q8NGT0 318 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 GPX8Q8TED1 209 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 C11orf40Q8WZ69 217 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 NICN1Q9BSH3 213 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 SELENOIQ9C0D9 397 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 TGIF2Q9GZN2 237 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 BANF2Q9H503 90 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 PRMT8Q9NR22 394 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 RARRES3Q9UL19 164 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 PCDHB10Q9UN67 800 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 RPH3AQ9Y2J0 694 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 RFPL4AA6NLU0 287 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 HMSDA8MTL9 139 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 RFPL4AL1F8VTS6 287 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 SRSF10O75494 262 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 IGHMP01871 453 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 CD2P06729 351 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 H2BFMP0C1H6 154 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 BDKRB2P30411 391 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms