RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 F5H5P2 479 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 IDH3BO43837 385 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 GPANK1O95872 356 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 LCATP04180 440 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 SCG5P05408 212 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 DBHP09172 617 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 COX4I1P13073 169 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 CD80P33681 288 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 GGT2P36268 569 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 MDH1P40925 334 aaKnown RBP9.69□□□□□ -0.86
COL6A3-213ENST00000493475 GATA4P43694 442 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 GSK3BP49841 420 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 RPL15P61313 204 aaKnown RBP9.69□□□□□ -0.86
COL6A3-213ENST00000493475 FHL1Q13642 323 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 OR8G1Q15617 311 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 C11orf91Q3C1V1 193 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 SPRNQ5BIV9 151 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 HACD2Q6Y1H2 254 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 TMEM86BQ8N661 226 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 POU5F2Q8N7G0 328 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 PLPP7Q8NBV4 271 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 OR52L1Q8NGH7 329 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 OR10S1Q8NGN2 331 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF420Q8TAQ5 688 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-213ENST00000493475 TMIGD2Q96BF3 282 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 TMEM246Q9BRR3 403 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 IFT27Q9BW83 186 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 C1QTNF5Q9BXJ0 243 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 POFUT1Q9H488 388 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 ARMCX1Q9P291 453 aa9.69□□□□□ -0.86
COL6A3-213ENST00000493475 TRAV38-1A0A0B4J264 116 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 GGT3PA6NGU5 568 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 SRRM5B3KS81 715 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 P2RY10O00398 339 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 GMDSO60547 372 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 PTP4A3O75365 173 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 GADD45GO95257 159 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 PPP1R3DO95685 299 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 PLATP00750 562 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 IGHV4-38-2P0DP08 117 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 GRK5P34947 590 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 OMPP47874 163 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 SF3A3Q12874 501 aaKnown RBP eCLIP9.68□□□□□ -0.86
COL6A3-213ENST00000493475 RFX4Q33E94 735 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 METTL11BQ5VVY1 283 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 RPL13AP3Q6NVV1 102 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 BCL6BQ8N143 479 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-213ENST00000493475 TBC1D15Q8TC07 691 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 Q8TCH9 128 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 GATAD2BQ8WXI9 593 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 TRIM15Q9C019 465 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 SP140LQ9H930 580 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 SRA1Q9HD15 236 aaKnown RBP9.68□□□□□ -0.86
COL6A3-213ENST00000493475 C14orf119Q9NWQ9 140 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 RNF7Q9UBF6 113 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 CAB39Q9Y376 341 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-213ENST00000493475 MMP24Q9Y5R2 645 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 POMT1Q9Y6A1 747 aa9.68□□□□□ -0.86
COL6A3-213ENST00000493475 IGHV3OR16-10A0A075B7F0 116 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 BTBD17A6NE02 478 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 M0QZ24 198 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 NME4O00746 187 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 TIMM23O14925 209 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ARPC3O15145 178 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 HOXA3O43365 443 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 OR10H3O60404 316 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 TOX4O94842 621 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF205O95201 554 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ECDO95905 644 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 CD200P41217 278 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 FGF12P61328 243 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 HIST1H3AP68431 136 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 SPIBQ01892 262 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 TRAP1Q12931 704 aaKnown RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 GK2Q14410 553 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 TAF13Q15543 124 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 OR8B8Q15620 311 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 SNCBQ16143 134 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 TUSC1Q2TAM9 212 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 HIST2H3PS2Q5TEC6 136 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 WDR25Q64LD2 544 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 GLYATQ6IB77 296 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 COLCA1Q6ZS62 124 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 HIST2H3AQ71DI3 136 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 OR52J3Q8NH60 311 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 SSMEM1Q8WWF3 244 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 SLCO4A1Q96BD0 722 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF48Q96MX3 618 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 PCGF1Q9BSM1 259 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ADAT1Q9BUB4 502 aaKnown RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 WDR76Q9H967 626 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 RPRD1BQ9NQG5 326 aaKnown RBP9.67□□□□□ -0.86
COL6A3-213ENST00000493475 ADA2Q9NZK5 511 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 NDUFAF4Q9P032 175 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 MAGEL2Q9UJ55 1249 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 B9D1Q9UPM9 204 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 LHFPL6Q9Y693 200 aa9.67□□□□□ -0.86
COL6A3-213ENST00000493475 FAM181BA6NEQ2 426 aa9.66□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF879B4DU55 563 aa9.66□□□□□ -0.86
COL6A3-213ENST00000493475 M0R135 149 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms