RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 DMBX1Q8NFW5 382 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 EMG1Q92979 244 aaKnown RBP5.48□□□□□ -1.53
HERC4-209ENST00000473533 CPNE2Q96FN4 548 aaPredicted RBP5.48□□□□□ -1.53
HERC4-209ENST00000473533 ZNF285Q96NJ3 590 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 DMRTA2Q96SC8 542 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 MAP3K3Q99759 626 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 NRIP2Q9BQI9 281 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 SMDT1Q9H4I9 107 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 METTL8Q9H825 291 aaKnown RBP5.48□□□□□ -1.53
HERC4-209ENST00000473533 TUBA4BQ9H853 241 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 SEC61A2Q9H9S3 476 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 PLEKHA2Q9HB19 425 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 RHOFQ9HBH0 211 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 C1orf123Q9NWV4 160 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 ZNF230Q9UIE0 474 aaPredicted RBP5.48□□□□□ -1.53
HERC4-209ENST00000473533 CACNA1IQ9P0X4 2223 aa5.48□□□□□ -1.53
HERC4-209ENST00000473533 PLPP3O14495 311 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 SRSF10O75494 262 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 KLF8O95600 359 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 ST6GAL1P15907 406 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PTAFRP25105 342 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RBMXP38159 391 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 CSNK1EP49674 416 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 SLC37A1P57057 533 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ZNF117Q03924 483 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 Q6ZSR6 202 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ZNF101Q8IZC7 436 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 C12orf76Q8N812 135 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 CCL4L1Q8NHW4 92 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 SFT2D1Q8WV19 159 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RNF133Q8WVZ7 376 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 NKD1Q969G9 470 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PDE7BQ9NP56 450 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 G6PC2Q9NQR9 355 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 COA4Q9NYJ1 87 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RCC2Q9P258 522 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 LILRA5A6NI73 299 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 K7EQS6 105 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 MBTPS2O43462 519 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 FBXO24O75426 580 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PLGP00747 810 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 MT-ND4LP03901 98 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 CSTBP04080 98 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 DRD1P21728 446 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 CD1CP29017 333 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PMELP40967 661 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 SULT1A2P50226 295 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RAB1AP62820 205 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 INSM1Q01101 510 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 MFGE8Q08431 387 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 ZNF528Q3MIS6 628 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 BEX5Q5H9J7 111 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 OR10K2Q6IF99 312 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 HIST2H3AQ71DI3 136 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 LFNGQ8NES3 379 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 SLC26A10Q8NG04 563 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 OR2AJ1Q8NGZ0 328 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 MFSD8Q8NHS3 518 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RHBDD1Q8TEB9 315 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 DDIT4LQ96D03 193 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RAB3CQ96E17 227 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 AMELYQ99218 206 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 OCSTAMPQ9BR26 566 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ZNF251Q9BRH9 671 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PBDC1Q9BVG4 233 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PTDSS2Q9BVG9 487 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 UNKLQ9H9P5 680 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 TAF9BQ9HBM6 251 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.47□□□□□ -1.531e-6■□□□□ 10.3
HERC4-209ENST00000473533 PNO1Q9NRX1 252 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 STARD5Q9NSY2 213 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 FAM212BQ9NTI7 297 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 MRPL22Q9NWU5 206 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 GPR132Q9UNW8 380 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 STRAPQ9Y3F4 350 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 FITM1A5D6W6 292 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 TMEM14DPA8MWL7 114 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 RNASEK-C17orf49H0YIS7 233 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 PNPP00491 289 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 GIMD1P0DJR0 217 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 AMY2BP19961 511 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ABCD3P28288 659 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ZNF93P35789 620 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 APOBEC1P41238 236 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 DCXRQ7Z4W1 244 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 NUBPLQ8TB37 319 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 TCTEX1D2Q8WW35 142 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 TMED6Q8WW62 240 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 ADOQ96SZ5 270 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 USB1Q9BQ65 265 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 NXF5Q9H1B4 397 aaKnown RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 WDR13Q9H1Z4 485 aa5.47□□□□□ -1.53
HERC4-209ENST00000473533 COA3Q9Y2R0 106 aaPredicted RBP5.47□□□□□ -1.53
HERC4-209ENST00000473533 SOX1O00570 391 aaPredicted RBP5.46□□□□□ -1.53
HERC4-209ENST00000473533 NPIPB7O75200 414 aa5.46□□□□□ -1.53
HERC4-209ENST00000473533 HIST1H1DP16402 221 aaKnown RBP5.46□□□□□ -1.53
HERC4-209ENST00000473533 CTLA4P16410 223 aa5.46□□□□□ -1.53
HERC4-209ENST00000473533 ITGB8P26012 769 aa5.46□□□□□ -1.53
HERC4-209ENST00000473533 AVPR2P30518 371 aa5.46□□□□□ -1.53
HERC4-209ENST00000473533 ARFRP1Q13795 201 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms