RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF670-ZNF695F2Z2N8 137 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 M0R233 179 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 PSMD9O00233 223 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 WBP4O75554 376 aaKnown RBP10.23□□□□□ -0.77
VPS13D-204ENST00000469054 APOL3O95236 402 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ADRA2AP08913 450 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ALDH3B1P43353 468 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 CX3CR1P49238 355 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 PPOXP50336 477 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 AQP4P55087 323 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ISL1P61371 349 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ROM1Q03395 351 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 PSG7Q13046 419 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 NKPD1Q17RQ9 610 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 TMEM255AQ5JRV8 349 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF322Q6U7Q0 402 aaPredicted RBP10.23□□□□□ -0.77
VPS13D-204ENST00000469054 LRRN1Q6UXK5 716 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 FBXW12Q6X9E4 464 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF679Q8IYX0 411 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 HAVCR1Q96D42 359 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 OR8B4Q96RC9 309 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 VRK1Q99986 396 aaPredicted RBP10.23□□□□□ -0.77
VPS13D-204ENST00000469054 NIPAL2Q9H841 368 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 AMBNQ9NP70 447 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 N6AMT1Q9Y5N5 214 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 DSCAMO60469 2012 aa10.23□□□□□ -0.77
VPS13D-204ENST00000469054 A0A1W2PQL4 384 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 J3QRE1 110 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 NDUFS7O75251 213 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF254O75437 659 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 IGHV4-39P01824 125 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ANXA2P07355 339 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 GNAO1P09471 354 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 SLC2A1P11166 492 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 DBTP11182 482 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 RAC2P15153 192 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 DCTDP32321 178 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 LIPAP38571 399 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF121P58317 390 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF91Q05481 1191 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 EGR3Q06889 387 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 MALLQ13021 153 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 HLXQ14774 488 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 TESK1Q15569 626 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 SNAI3Q3KNW1 292 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ALKBH6Q3KRA9 238 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 SHEQ5VZ18 495 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 PRSS57Q6UWY2 283 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 USP51Q70EK9 711 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 PRSS45Q7RTY3 260 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 C8orf59Q8N0T1 100 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 ZCCHC24Q8N2G6 241 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 RFLNBQ8N5W9 214 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 OR10H4Q8NGA5 316 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 CNIH3Q8TBE1 160 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 SORCS2Q96PQ0 1159 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 TBX5Q99593 518 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 RAB1BQ9H0U4 201 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 SP140LQ9H930 580 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 BARX1Q9HBU1 254 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 PTTG3PQ9NZH4 202 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 PURGQ9UJV8 347 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 IKZF2Q9UKS7 526 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 EXOGQ9Y2C4 368 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 RPL36Q9Y3U8 105 aaKnown RBP10.22□□□□□ -0.77
VPS13D-204ENST00000469054 LRP12Q9Y561 859 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 PCDHGB1Q9Y5G3 927 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 USF3Q68DE3 2245 aa10.22□□□□□ -0.77
VPS13D-204ENST00000469054 HRNRQ86YZ3 2850 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 C5orf63A6NC05 138 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 TIMM8AO60220 97 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 ERCC1P07992 297 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 NAT2P11245 290 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 KITLGP21583 273 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 ANOS1P23352 680 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 RIDAP52758 137 aaKnown RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 EFNA4P52798 201 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 PSMA6P60900 246 aaKnown RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 ACTC1P68032 377 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 ACTA1P68133 377 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 CDK5R2Q13319 367 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 GK2Q14410 553 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 SMN1Q16637 294 aaKnown RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 GLYATL3Q5SZD4 288 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 C6orf52Q5T4I8 152 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 OR2T2Q6IF00 324 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 FAM57BQ71RH2 274 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 PGAP1Q75T13 922 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 SSX6Q7RTT6 188 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 KRTAP1-3Q8IUG1 177 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 OR52H1Q8NGJ2 320 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 SNX33Q8WV41 574 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 RNF166Q96A37 237 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 LGALS12Q96DT0 336 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 TTTY10Q9BZA0 68 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 OR10A2Q9H208 303 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 BRD7Q9NPI1 651 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 CYSLTR2Q9NS75 346 aa10.21□□□□□ -0.77
VPS13D-204ENST00000469054 MRPS18AQ9NVS2 196 aaKnown RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 CGGBP1Q9UFW8 167 aaPredicted RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms