RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 KLHL36Q8N4N3 616 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 OR5L1Q8NGL2 311 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 LILRB1Q8NHL6 650 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-205ENST00000466897 TMEM171Q8WVE6 324 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 ITFG2Q969R8 447 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 MARVELD3Q96A59 401 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 C4orf36Q96KX1 117 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 TTTY10Q9BZA0 68 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF391Q9UJN7 358 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 GNG8Q9UK08 70 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 POU2F3Q9UKI9 436 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 R4GMQ9 66 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 TMEM269A0A1B0GVZ9 245 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 A0A1W2PPR1 153 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 HS3ST1O14792 307 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 PLAUP00749 431 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 NGFP01138 241 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 MT-ND5P03915 603 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 OR12D2P58182 307 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 PPP1CBP62140 327 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 IRF3Q14653 427 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 TP53I3Q53FA7 332 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 MBNL2Q5VZF2 373 aaKnown RBP13.08□□□□□ -0.32
NPHP4-205ENST00000466897 YIPF7Q8N8F6 280 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 ZNF485Q8NCK3 441 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 OR1J1Q8NGS3 322 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 ABHD4Q8TB40 342 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 PELI1Q96FA3 418 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 DHRS9Q9BPW9 319 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 CLEC4MQ9H2X3 399 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-205ENST00000466897 RGCCQ9H4X1 137 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 OPA3Q9H6K4 179 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 ACOXLQ9NUZ1 547 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 NUFIP1Q9UHK0 495 aaKnown RBP13.08□□□□□ -0.32
NPHP4-205ENST00000466897 ERGIC3Q9Y282 383 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 SNX5Q9Y5X3 404 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 ATP23Q9Y6H3 246 aa13.08□□□□□ -0.32
NPHP4-205ENST00000466897 CYSRT1A8MQ03 144 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 VSTM5A8MXK1 200 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 E7EQL1 145 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 MYL12BO14950 172 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 MAGEB4O15481 346 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 XRCC2O43543 280 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 TNFAIP8O95379 198 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 LCATP04180 440 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 ANXA2P07355 339 aaKnown RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 HTR1AP08908 422 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 FAM157BP0CG42 384 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 ZNF250P15622 560 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 TGM4P49221 684 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 CCR9P51686 369 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 CHN2P52757 468 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 SNAI3Q3KNW1 292 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 CCDC58Q4VC31 144 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 RGS7BPQ6MZT1 257 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 FBXW12Q6X9E4 464 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 NAA40Q86UY6 237 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 NANOGP1Q8N7R0 232 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 SGCDQ92629 289 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 AKAP1Q92667 903 aaKnown RBP eCLIP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 RORBQ92753 470 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 FBXW5Q969U6 566 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 RNF166Q96A37 237 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 SPSB4Q96A44 273 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 MARS2Q96GW9 593 aaKnown RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 MND1Q9BWT6 205 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 OR10A2Q9H208 303 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 CISD1Q9NZ45 108 aaKnown RBP13.07□□□□□ -0.32
NPHP4-205ENST00000466897 ERVK-18Q9QC07 812 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 CLEC2DQ9UHP7 191 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 STARD10Q9Y365 291 aa13.07□□□□□ -0.32
NPHP4-205ENST00000466897 IGLV3-9A0A075B6K5 115 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 A0A0U1RQV5 110 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 LOC110117498-PIK3R3F6TDL0 507 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 J3QLW9 94 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 GPRIN2O60269 458 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 PNPP00491 289 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 LCKP06239 509 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 ZNF19P17023 458 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 CFL1P23528 166 aaKnown RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 EEF1B2P24534 225 aaKnown RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 APOBEC3AP31941 199 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 THBS4P35443 961 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 EVX1P49640 407 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 GBX2P52951 348 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 WNT4P56705 351 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 MFGE8Q08431 387 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 MALLQ13021 153 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 EFNB3Q15768 340 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 TBCEQ15813 527 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 ADIPOQQ15848 244 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 ZNF718Q3SXZ3 478 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 CATSPERDQ86XM0 798 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 ZNF611Q8N823 705 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 RPS4Y2Q8TD47 263 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 SPRYD4Q8WW59 207 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 MRPL24Q96A35 216 aaKnown RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 NR1H4Q96RI1 486 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-205ENST00000466897 PLEKHF2Q9H8W4 249 aa13.06□□□□□ -0.32
NPHP4-205ENST00000466897 ISG20L2Q9H9L3 353 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms