RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 MAP6Q96JE9 813 aa17.15■□□□□ 0.34
COL6A1-203ENST00000466285 COG8Q96MW5 612 aa17.15■□□□□ 0.34
COL6A1-203ENST00000466285 OR52D1Q9H346 318 aa17.15■□□□□ 0.34
COL6A1-203ENST00000466285 ZMAT3Q9HA38 289 aaKnown RBP17.15■□□□□ 0.34
COL6A1-203ENST00000466285 RPRD1BQ9NQG5 326 aaKnown RBP17.15■□□□□ 0.34
COL6A1-203ENST00000466285 MRPL22Q9NWU5 206 aaKnown RBP17.15■□□□□ 0.34
COL6A1-203ENST00000466285 TMCC3Q9ULS5 477 aa17.15■□□□□ 0.34
COL6A1-203ENST00000466285 OR6C68A6NDL8 312 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 F5H5K5 113 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 CLDN34H7C241 214 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 J3QW42 95 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 PSME3P61289 254 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 SNAI3Q3KNW1 292 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 WDR25Q64LD2 544 aaPredicted RBP17.14■□□□□ 0.33
COL6A1-203ENST00000466285 SPATC1Q76KD6 591 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 GJC3Q8NFK1 279 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 SLC25A28Q96A46 364 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 HOPXQ9BPY8 73 aaPredicted RBP17.14■□□□□ 0.33
COL6A1-203ENST00000466285 NUDT16L1Q9BRJ7 211 aaKnown RBP17.14■□□□□ 0.33
COL6A1-203ENST00000466285 CCDC134Q9H6E4 229 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 MARCH7Q9H992 704 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 SMURF1Q9HCE7 757 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 AURKCQ9UQB9 309 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 AP3M1Q9Y2T2 418 aa17.14■□□□□ 0.33
COL6A1-203ENST00000466285 PPIAL4GP0DN37 164 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 RHCEP18577 417 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 GATA4P43694 442 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 RPS6KA3P51812 740 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 RELBQ01201 579 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 TRAP1Q12931 704 aaKnown RBP17.13■□□□□ 0.33
COL6A1-203ENST00000466285 ZNF181Q2M3W8 571 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 BTNL3Q6UXE8 466 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 LRRN1Q6UXK5 716 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 TREML4Q6UXN2 200 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 HACD2Q6Y1H2 254 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 OR8B3Q8NGG8 313 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 OR2AE1Q8NHA4 323 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 OR8B2Q96RD0 313 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 NDEL1Q9GZM8 345 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 DCAF13Q9NV06 445 aaKnown RBP17.13■□□□□ 0.33
COL6A1-203ENST00000466285 MIOXQ9UGB7 285 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 WNK1Q9H4A3 2382 aa17.13■□□□□ 0.33
COL6A1-203ENST00000466285 KIR2DS1A0A191URI9 304 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 MDH1P40925 334 aaKnown RBP17.12■□□□□ 0.33
COL6A1-203ENST00000466285 ELF3P78545 371 aaPredicted RBP17.12■□□□□ 0.33
COL6A1-203ENST00000466285 GLYATQ6IB77 296 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 FGFRL1Q8N441 504 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 OR5L1Q8NGL2 311 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 SLCO4A1Q96BD0 722 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 TMIGD2Q96BF3 282 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 PITX2Q99697 317 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 ATF6BQ99941 703 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 TMEM100Q9NV29 134 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 FAM53CQ9NYF3 392 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 CYB5R1Q9UHQ9 305 aa17.12■□□□□ 0.33
COL6A1-203ENST00000466285 NOTCH1P46531 2555 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 CA6P23280 308 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 CRABP1P29762 137 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 PYCR1P32322 319 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 MSX2P35548 267 aaPredicted RBP17.11■□□□□ 0.33
COL6A1-203ENST00000466285 PSMB10P40306 273 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 CD200P41217 278 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 KRTAP10-3P60369 221 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 IL13RA1P78552 427 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 SPIBQ01892 262 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 RFX4Q33E94 735 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 SFRP4Q6FHJ7 346 aaPredicted RBP17.11■□□□□ 0.33
COL6A1-203ENST00000466285 ZBTB46Q86UZ6 589 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 Q8TCH9 128 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 TBX15Q96SF7 602 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 MYLK2Q9H1R3 596 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 EGLN3Q9H6Z9 239 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 EFCAB1Q9HAE3 211 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 CLN8Q9UBY8 286 aa17.11■□□□□ 0.33
COL6A1-203ENST00000466285 A0A1B0GW55 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 FAM181BA6NEQ2 426 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 C3orf80F5H4A9 247 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 IFNL4K9M1U5 179 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 LCATP04180 440 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L2P0CJ85 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L3P0CJ86 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L4P0CJ87 422 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L5P0CJ88 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L6P0CJ89 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L7P0CJ90 424 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 MMP9P14780 707 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 ZNF92Q03936 586 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 HSP90B2PQ58FF3 399 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 SLC35F1Q5T1Q4 408 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DNM1P34Q6PK57 102 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DUX4L9Q6RFH8 374 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-203ENST00000466285 DCDC5Q6ZRR9 648 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 ZNF826PQ6ZT77 177 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 BOLLQ8N9W6 283 aaKnown RBP17.1■□□□□ 0.33
COL6A1-203ENST00000466285 CYB561A3Q8NBI2 242 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 WFDC12Q8WWY7 111 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 IFT27Q9BW83 186 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 HCAR1Q9BXC0 346 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 CHIAQ9BZP6 476 aa17.1■□□□□ 0.33
COL6A1-203ENST00000466285 RASSF4Q9H2L5 321 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms