RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 METTL21EPA6NDL7 271 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 PATE3B3GLJ2 98 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF878C9JN71 531 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 MASP2O00187 686 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SULT2B1O00204 365 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 FGF5P12034 268 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 CCL4P13236 92 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 RAB3AP20336 220 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 RAB6AP20340 208 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF121P58317 390 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SEC61A1P61619 476 aaKnown RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 GABREP78334 506 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 TAF13Q15543 124 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 CDNFQ49AH0 187 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 TOR2AQ5JU69 321 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 OR52W1Q6IF63 320 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 FJX1Q86VR8 437 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 COMMD2Q86X83 199 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF584Q8IVC4 421 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SLC22A24Q8N4F4 322 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ADPRHL1Q8NDY3 354 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 OR8B12Q8NGG6 310 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 OR6X1Q8NH79 312 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 FXYD6Q9H0Q3 95 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ALX4Q9H161 411 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SLCO5A1Q9H2Y9 848 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 GLTPQ9NZD2 209 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 FBXO4Q9UKT5 387 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 TNRC6BQ9UPQ9 1833 aaKnown RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 LOC100509620A0A075B734 347 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 IGHV1-45A0A0A0MS14 117 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF726A6NNF4 738 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 G3V3Y1 287 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SMAD9O15198 467 aaKnown RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 PDGFBP01127 241 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 CD74P04233 296 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 UMODP07911 640 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 MELTFP08582 738 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 LIPCP11150 499 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 NAT1P18440 290 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 POU3F2P20265 443 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 CLDN17P56750 224 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 DMRTC1Q5HYR2 192 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ATPAF1Q5TC12 328 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 C3P1Q6ZMU1 363 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 RFPL4BQ6ZWI9 263 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ABHD12BQ7Z5M8 362 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 TRAPPC6BQ86SZ2 158 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 COMMD7Q86VX2 200 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ANGPTL5Q86XS5 388 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 OR13C8Q8NGS7 320 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 ANGPTL6Q8NI99 470 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 NUDCD2Q8WVJ2 157 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 MR1Q95460 341 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 GNRHR2Q96P88 292 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 SLC25A21Q9BQT8 299 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 GSX2Q9BZM3 304 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 PNRC2Q9NPJ4 139 aaKnown RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 PRDM6Q9NQX0 595 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 UPB1Q9UBR1 384 aa7.92□□□□□ -1.14
SYNE1-217ENST00000466159 PTRH2Q9Y3E5 179 aaKnown RBP7.92□□□□□ -1.14
SYNE1-217ENST00000466159 LOC102723996A0A087X1L8 192 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 LOC105371267A0A1B0GV96 52 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 AQP7P3A6NL99 342 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 TP53I11O14683 189 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 PMS2P2O95744 297 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 CCL3P10147 92 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 GNB3P16520 340 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF17P17021 662 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF93P35789 620 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 EIF1P41567 113 aaKnown RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 RAB14P61106 215 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 HLXQ14774 488 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 HIST3H3Q16695 136 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 GFOD2Q3B7J2 385 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 AWAT2Q6E213 333 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF529Q6P280 563 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 TMEM81Q6P7N7 255 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 TMPPEQ6ZT21 453 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 Q7L0L9 218 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 CDH26Q8IXH8 852 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 EDAQ92838 391 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 CYYR1Q96J86 154 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 FAM71F1Q96KD3 344 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 UQCC2Q9BRT2 126 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 NICN1Q9BSH3 213 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 WDR54Q9H977 334 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 GPR84Q9NQS5 396 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 GPN3Q9UHW5 284 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 HDGFL3Q9Y3E1 203 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 IGHV3-15A0A0B4J1V0 119 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 C5orf63A6NC05 138 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 OR14I1A6ND48 311 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 D6RAR5 112 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 E9PLN8 166 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 H3BUI4 141 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 KLF7O75840 302 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-217ENST00000466159 BPNT1O95861 308 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 COX6A1P12074 109 aa7.91□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF250P15622 560 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms