RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 EGR3Q06889 387 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF322Q6U7Q0 402 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 PRSS57Q6UWY2 283 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 FBXW12Q6X9E4 464 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 MRPL21Q7Z2W9 205 aaKnown RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 LRP11Q86VZ4 500 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF679Q8IYX0 411 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 C8orf59Q8N0T1 100 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 OR10H4Q8NGA5 316 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 RNFT2Q96EX2 444 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 MRPL48Q96GC5 212 aaKnown RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 AMELYQ99218 206 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 PTTG3PQ9NZH4 202 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 RPL36Q9Y3U8 105 aaKnown RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 LRBAP50851 2863 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 XRCC2O43543 280 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 CLPTM1O96005 669 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 GABRB1P18505 474 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 CFL1P23528 166 aaKnown RBP16.96■□□□□ 0.31
COL9A3-204ENST00000463487 DCTDP32321 178 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 MPV17P39210 176 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 ALDH3B1P43353 468 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 HSPA13P48723 471 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 RIDAP52758 137 aaKnown RBP16.96■□□□□ 0.31
COL9A3-204ENST00000463487 EFNA4P52798 201 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 HCCSP53701 268 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 ADARB1P78563 741 aaKnown RBP16.96■□□□□ 0.31
COL9A3-204ENST00000463487 ROM1Q03395 351 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 MSMPQ1L6U9 139 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF829Q3KNS6 432 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-204ENST00000463487 LRRN1Q6UXK5 716 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 NEU4Q8WWR8 484 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-204ENST00000463487 HAVCR1Q96D42 359 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 CMBLQ96DG6 245 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 OR8B4Q96RC9 309 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 OR10A2Q9H208 303 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 KLHDC2Q9Y2U9 406 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 LRP12Q9Y561 859 aa16.96■□□□□ 0.31
COL9A3-204ENST00000463487 IRGMA1A4Y4 181 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 KRT8P05787 483 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 KITLGP21583 273 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 ZNF121P58317 390 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 PSMA6P60900 246 aaKnown RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 MAD2L1BPQ15013 274 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 PCGF3Q3KNV8 242 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 KLHL22Q53GT1 634 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 Q5PR19 223 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 PGAP1Q75T13 922 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 FAM220AQ7Z4H9 259 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 PGAM5Q96HS1 289 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 DIRC2Q96SL1 478 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 MYOZ1Q9NP98 299 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 MYEF2Q9P2K5 600 aaKnown RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 PURGQ9UJV8 347 aaKnown RBP16.95■□□□□ 0.3
COL9A3-204ENST00000463487 COPS3Q9UNS2 423 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 N6AMT1Q9Y5N5 214 aa16.95■□□□□ 0.3
COL9A3-204ENST00000463487 ACOD1A6NK06 481 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 TBX1O43435 398 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 FADS2O95864 444 aaKnown RBP16.94■□□□□ 0.3
COL9A3-204ENST00000463487 F12P00748 615 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-204ENST00000463487 CSF3P09919 207 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 DBTP11182 482 aaKnown RBP16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ZNF81P51508 661 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ZNF91Q05481 1191 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 RAB40BQ12829 278 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 PSG7Q13046 419 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 TIGD6Q17RP2 521 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 NRG4Q8WWG1 115 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 SORCS2Q96PQ0 1159 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 TBX5Q99593 518 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 RGCCQ9H4X1 137 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ZNF391Q9UJN7 358 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ZDHHC8Q9ULC8 765 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ARID1AO14497 2285 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 CSMD2Q7Z408 3487 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 ARFGEF3Q5TH69 2177 aa16.94■□□□□ 0.3
COL9A3-204ENST00000463487 PDZD2O15018 2839 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 USF3Q68DE3 2245 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 CCDC168Q8NDH2 2452 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 A0A1W2PQL4 384 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-204ENST00000463487 DAPL1A0PJW8 107 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 C17orf100A8MU93 164 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 APOL3O95236 402 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 CLIC3O95833 236 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 IGHV4-39P01824 125 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 SLC2A1P11166 492 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 TNFSF4P23510 183 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 DSCR9P59020 149 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 SNAI3Q3KNW1 292 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 ALKBH6Q3KRA9 238 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 CLEC2AQ6UVW9 174 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 PLEKHG7Q6ZR37 379 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 USP51Q70EK9 711 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 FAM57BQ71RH2 274 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 NAA40Q86UY6 237 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 ACBD7Q8N6N7 88 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 TTTY10Q9BZA0 68 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 TPK1Q9H3S4 243 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 POFUT1Q9H488 388 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 MOB1AQ9H8S9 216 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms