RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 FITM2Q8N6M3 262 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 PITX2Q99697 317 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 CCDC134Q9H6E4 229 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 EFCAB1Q9HAE3 211 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 SRA1Q9HD15 236 aaKnown RBP13.42□□□□□ -0.26
COL7A1-204ENST00000462475 KRCC1Q9NPI7 259 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-204ENST00000462475 CLN8Q9UBY8 286 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 V9GYQ6 96 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 POM121CA8CG34 1229 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 C22orf46C9J442 243 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 F5H5K5 113 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 FAM20BO75063 409 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 HIST1H1CP16403 213 aaKnown RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 OMGP23515 440 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 RAD23AP54725 363 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 PSME3P61289 254 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 FGF12P61328 243 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 TRAP1Q12931 704 aaKnown RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 DEFB112Q30KQ8 113 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 CLEC12AQ5QGZ9 265 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 WDR25Q64LD2 544 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 C16orf87Q6PH81 154 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 ZNF841Q6ZN19 808 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 DCDC5Q6ZRR9 648 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 NAA40Q86UY6 237 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 OR10S1Q8NGN2 331 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 OR4K13Q8NH42 304 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 Q8TCH9 128 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 TMIGD2Q96BF3 282 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 ATF6BQ99941 703 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 OR52D1Q9H346 318 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 FN3KQ9H479 309 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 PNRC2Q9NPJ4 139 aaKnown RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 RPRD1BQ9NQG5 326 aaKnown RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 UFSP2Q9NUQ7 469 aa13.41□□□□□ -0.26
COL7A1-204ENST00000462475 DCAF13Q9NV06 445 aaKnown RBP13.41□□□□□ -0.26
COL7A1-204ENST00000462475 NDUFAB1O14561 156 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 PHYHO14832 338 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 ARPC3O15145 178 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 ATP8B1O43520 1251 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 CCDC22O60826 627 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 RENP00797 406 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 IRF2P14316 349 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 ANOS1P23352 680 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 SLC6A6P31641 620 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 GGT2P36268 569 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 PSMB10P40306 273 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 CD200P41217 278 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 MPPED2Q15777 294 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 RFX4Q33E94 735 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 GLYATQ6IB77 296 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 RNF148Q8N7C7 305 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 SLCO4A1Q96BD0 722 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 CYB5R1Q9UHQ9 305 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 TMCC3Q9ULS5 477 aa13.4□□□□□ -0.26
COL7A1-204ENST00000462475 SAMD4AQ9UPU9 718 aaKnown RBP13.4□□□□□ -0.26
COL7A1-204ENST00000462475 OR6C68A6NDL8 312 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 LCATP04180 440 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 ECH1Q13011 328 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 KRT72Q14CN4 511 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 RUSC1-AS1Q66K80 236 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 PGAP1Q75T13 922 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 ZBTB46Q86UZ6 589 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 CELF2-AS1Q8N7Q2 184 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 SDR9C7Q8NEX9 313 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 OR11L1Q8NGX0 322 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 MAP6Q96JE9 813 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 IFT27Q9BW83 186 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 SLITRK2Q9H156 845 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 MMADHCQ9H3L0 296 aaPredicted RBP13.39□□□□□ -0.27
COL7A1-204ENST00000462475 PRDM13Q9H4Q3 707 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 TNFRSF19Q9NS68 423 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 MRPL22Q9NWU5 206 aaKnown RBP13.39□□□□□ -0.27
COL7A1-204ENST00000462475 CTSZQ9UBR2 303 aa13.39□□□□□ -0.27
COL7A1-204ENST00000462475 FAM181BA6NEQ2 426 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 ENSAO43768 121 aaKnown RBP13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SEMG1P04279 462 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SFTPBP07988 381 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 CA6P23280 308 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 RPS27P42677 84 aaKnown RBP13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SPIBQ01892 262 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 MALLQ13021 153 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 OR8G1Q15617 311 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SNAI3Q3KNW1 292 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SLC36A3Q495N2 470 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 GPR157Q5UAW9 335 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 MRPL21Q7Z2W9 205 aaKnown RBP13.38□□□□□ -0.27
COL7A1-204ENST00000462475 OR2AJ1Q8NGZ0 328 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SPRYD4Q8WW59 207 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-204ENST00000462475 ZDHHC16Q969W1 377 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 ERGIC1Q969X5 290 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 TECTBQ96PL2 329 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 PCGF1Q9BSM1 259 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 ADAT1Q9BUB4 502 aaKnown RBP13.38□□□□□ -0.27
COL7A1-204ENST00000462475 MARCH7Q9H992 704 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 SPAG4Q9NPE6 437 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF446Q9NWS9 450 aa13.38□□□□□ -0.27
COL7A1-204ENST00000462475 C5orf63A6NC05 138 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 CD300LBA8K4G0 201 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 SRRM5B3KS81 715 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms