RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RGS8P57771 180 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 LRRC74AQ0VAA2 488 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 ART3Q13508 389 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 DGCR6Q14129 220 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 CENPQQ7L2Z9 268 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 CBLN2Q8IUK8 224 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 MIR7-3HGQ8N6C7 128 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 CSGALNACT2Q8N6G5 542 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 SNX31Q8N9S9 440 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 OR9G4Q8NGQ1 327 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 NRBF2Q96F24 287 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 ZNF317Q96PQ6 595 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 XPO6Q96QU8 1125 aaKnown RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 CHP1Q99653 195 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 ACTR3CQ9C0K3 210 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 FAM192AQ9GZU8 254 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 TMEM185BQ9H7F4 350 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 NEK6Q9HC98 313 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 MYOZ1Q9NP98 299 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 RRP15Q9Y3B9 282 aaKnown RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 CBY1Q9Y3M2 126 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 ANKRD12Q6UB98 2062 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 COL22A1Q8NFW1 1626 aaPredicted RBP2.02□□□□□ -2.09
USP40-209ENST00000452724 IGHV1-69DA0A0B4J2H0 117 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 IGHV7-4-1A0A0J9YVY3 117 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 A6NDN8 102 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 SYCE1LA8MT33 242 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 NDUFC2-KCTD14E9PQ53 114 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 PLPP1O14494 284 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 LSM8O95777 96 aaKnown RBP2.02□□□□□ -2.09
USP40-209ENST00000452724 IGHV3-11P01762 117 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 TALDO1P37837 337 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 IDI1Q13907 227 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 RBMY1FQ15415 496 aaKnown RBP2.02□□□□□ -2.09
USP40-209ENST00000452724 HSDL1Q3SXM5 330 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 H3F3CQ6NXT2 135 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 SCD5Q86SK9 330 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 TMEM105Q8N8V8 129 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 TTC29Q8NA56 475 aaPredicted RBP2.02□□□□□ -2.09
USP40-209ENST00000452724 ST20-AS1Q8NBB2 130 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 GPR26Q8NDV2 337 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 OR10G6Q8NH81 332 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 FAM81AQ8TBF8 368 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 MCUR1Q96AQ8 359 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 RNF145Q96MT1 663 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 SAMD10Q9BYL1 202 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 TMEM38AQ9H6F2 299 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 BEX1Q9HBH7 125 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 AGPAT4Q9NRZ5 378 aa2.02□□□□□ -2.09
USP40-209ENST00000452724 LYARQ9NX58 379 aaKnown RBP2.02□□□□□ -2.09
USP40-209ENST00000452724 SMIM26A0A096LP01 95 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 IGHV3-72A0A0B4J1Y9 119 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 ZNF233A6NK53 670 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 OR5H1A6NKK0 313 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SLC9A3R1O14745 358 aaPredicted RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 EIF1BO60739 113 aaKnown RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 CDH16O75309 829 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 GLSO94925 669 aaPredicted RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 PAHP00439 452 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 HBE1P02100 147 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 EIF1P41567 113 aaKnown RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 SYKP43405 635 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 RPS15P62841 145 aaKnown RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 CYP24A1Q07973 514 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 PPIDQ08752 370 aaKnown RBP2.01□□□□□ -2.09
USP40-209ENST00000452724 NCF4Q15080 339 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SPANXN2Q5MJ10 180 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SPESP1Q6UW49 350 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 CALHM3Q86XJ0 350 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SPANXA2-OT1Q8N9U9 137 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 NRGNQ92686 78 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 C8orf44Q96CB5 159 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 PRRC1Q96M27 445 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 PANX1Q96RD7 426 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 ZYG11BQ9C0D3 744 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SLC39A1Q9NY26 324 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 C21orf62Q9NYP8 219 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 PTTG3PQ9NZH4 202 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 SLC17A7Q9P2U7 560 aa2.01□□□□□ -2.09
USP40-209ENST00000452724 FHOD3Q2V2M9 1422 aa2□□□□□ -2.09
USP40-209ENST00000452724 CTAGE15A4D2H0 777 aa2□□□□□ -2.09
USP40-209ENST00000452724 NMT2O60551 498 aa2□□□□□ -2.09
USP40-209ENST00000452724 CCNB2O95067 398 aa2□□□□□ -2.09
USP40-209ENST00000452724 FGFR1OPO95684 399 aaKnown RBP2□□□□□ -2.09
USP40-209ENST00000452724 HPRT1P00492 218 aa2□□□□□ -2.09
USP40-209ENST00000452724 RAB4AP20338 218 aa2□□□□□ -2.09
USP40-209ENST00000452724 STOMP27105 288 aa2□□□□□ -2.09
USP40-209ENST00000452724 UQCRFS1P47985 274 aa2□□□□□ -2.09
USP40-209ENST00000452724 ZNF121P58317 390 aaPredicted RBP2□□□□□ -2.09
USP40-209ENST00000452724 TAS2R46P59540 309 aa2□□□□□ -2.09
USP40-209ENST00000452724 SLC39A6Q13433 755 aa2□□□□□ -2.09
USP40-209ENST00000452724 RCN1Q15293 331 aa2□□□□□ -2.09
USP40-209ENST00000452724 IGFBP7Q16270 282 aa2□□□□□ -2.09
USP40-209ENST00000452724 TEX30Q5JUR7 227 aa2□□□□□ -2.09
USP40-209ENST00000452724 METAP1DQ6UB28 335 aaPredicted RBP2□□□□□ -2.09
USP40-209ENST00000452724 CTAGE6Q86UF2 777 aa2□□□□□ -2.09
USP40-209ENST00000452724 OR1J4Q8NGS1 313 aa2□□□□□ -2.09
USP40-209ENST00000452724 GSDMAQ96QA5 445 aa2□□□□□ -2.09
USP40-209ENST00000452724 CDX2Q99626 313 aaPredicted RBP2□□□□□ -2.09
USP40-209ENST00000452724 TEKT3Q9BXF9 490 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms