RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 EDDM3AQ14507 147 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 RAB35Q15286 201 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 RBMS2Q15434 407 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 SPATA46Q5T0L3 261 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FAM27D1Q5T7N8 215 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 NRARPQ7Z6K4 114 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 OR1J1Q8NGS3 322 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ASB10Q8WXI3 467 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 A0A1W2PR80 420 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 NKX6-3A6NJ46 265 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 IFNA5P01569 189 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF32P17041 273 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ELK1P19419 428 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 DMRTC1Q5HYR2 192 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 AADACL4Q5VUY2 407 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 STEAP3Q658P3 488 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 STEAP1BQ6NZ63 245 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FAM198BQ6UWH4 519 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 H1FXQ92522 213 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 BARHL1Q9BZE3 327 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FAIMQ9NVQ4 179 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LSM5Q9Y4Y9 91 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 TPRP12270 2363 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 A0A0G2JMP0 313 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 IFITM5A6NNB3 132 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 F5H5P2 479 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 HS3ST1O14792 307 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FAHP16930 419 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FUT5Q11128 374 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 CLVS2Q5SYC1 327 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF573Q86YE8 665 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZDHHC23Q8IYP9 409 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 OR4M2Q8NGB6 313 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 DVL3Q92997 716 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 PELI1Q96FA3 418 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZFP57Q9NU63 452 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 RIF1Q5UIP0 2472 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ARHGEF17Q96PE2 2063 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM82A0PJX8 343 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 MPZL1O95297 269 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 HLA-AP01891 365 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 NGFRP08138 427 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LIMS3P0CW19 117 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LIMS4P0CW20 117 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 PSMB1P20618 241 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ETFDHQ16134 617 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 SIAH3Q8IW03 269 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 C12orf45Q8N5I9 185 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 OR1S1Q8NH92 325 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZC3H10Q96K80 434 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 PSD2Q9BQI7 771 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 EXOGQ9Y2C4 368 aaKnown RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LYZL6O75951 148 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TMIGD3P0DMS9 266 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 GABRA1P14867 456 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TATDN3Q17R31 274 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 RGS7BPQ6MZT1 257 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 DPPA2Q7Z7J5 298 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CPEB3Q8NE35 698 aaKnown RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 OR56B4Q8NH76 319 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 DYNC2LI1Q8TCX1 351 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 SECTM1Q8WVN6 248 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 SPSB2Q99619 263 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 SF3B5Q9BWJ5 86 aaKnown RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CCDC88CQ9P219 2028 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 H7C1Q1 480 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 M0QYG6 137 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TO15178 435 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 MESTQ5EB52 335 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 WDR38Q5JTN6 314 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF774Q6NX45 483 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 DRAM2Q6UX65 266 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 GDPD3Q7L5L3 318 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 APH1BQ8WW43 257 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 HYLS1Q96M11 299 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 RBFOX1Q9NWB1 397 aaKnown RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 UGT2A1Q9Y4X1 527 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 MAB21L2Q9Y586 359 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 A0A0B4J203 849 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF816-ZNF321PA0A0X1KG74 233 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TRIM64A6NGJ6 449 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 AQP7P3A6NL99 342 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 BOLA2-SMG1P6H3BVE0 249 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 HLA-HP01893 362 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 PMP2P02689 132 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 ERP29P30040 261 aaKnown RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 SLC9A3R2Q15599 337 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 C2orf76Q3KRA6 126 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 PABPC1L2AQ5JQF8 200 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 LCN10Q6JVE6 187 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 PLXDC2Q6UX71 529 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 RNF128Q8TEB7 428 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 ADIPOR1Q96A54 375 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CTHRC1Q96CG8 243 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 UCN2Q96RP3 112 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF416Q9BWM5 594 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 PLXNA3P51805 1871 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CD300LBA8K4G0 201 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 BGLAPP02818 100 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 IFI6P09912 130 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms