RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CR1P17927 2039 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 CHD3Q12873 2000 aaKnown RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 VPS13CQ709C8 3753 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 A0A096LNT2 108 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 LYNX1G3V0Z9 82 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 EI24O14681 340 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 WIPF1O43516 503 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 TLX2O43763 284 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 PRKYO43930 277 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 SELENOFO60613 162 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 LYNX1P0DP58 116 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 SLC2A5P22732 501 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 EPHA2P29317 976 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 OTX1P32242 354 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 NAA10P41227 235 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 PRKXP51817 358 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 RAD23AP54725 363 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 HLXQ14774 488 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 OR2T2Q6IF00 324 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 Q71RC1 249 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 MRPL21Q7Z2W9 205 aaKnown RBP9.75□□□□□ -0.85
COL28A1-203ENST00000435823 NAA40Q86UY6 237 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 OR5AS1Q8N127 324 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 OTOSQ8NHW6 89 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 TMEM163Q8TC26 289 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 THEM6Q8WUY1 208 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 RNF133Q8WVZ7 376 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 ELMOD3Q96FG2 381 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 C9orf16Q9BUW7 83 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 ABHD6Q9BV23 337 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 SP140LQ9H930 580 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 MSL2Q9HCI7 577 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 USE1Q9NZ43 259 aa9.75□□□□□ -0.85
COL28A1-203ENST00000435823 IGHV1-69-2A0A0G2JMI3 117 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 SLC22A31A6NKX4 558 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CDC14BO60729 498 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 BAG2O95816 211 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CD55P08174 381 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 H2BFMP0C1H6 154 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 COL8A2P25067 703 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CRYBB2P43320 205 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 GPR6P46095 362 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CX3CR1P49238 355 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 ALDH3A2P51648 485 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CHN2P52757 468 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 TMEM33P57088 247 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CDC42P60953 191 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 TNFAIP6P98066 277 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CDK5R2Q13319 367 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 RIN1Q13671 783 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 GK2Q14410 553 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 TMEM249Q2WGJ8 235 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 HFEQ30201 348 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 NXNL2Q5VZ03 156 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 USP51Q70EK9 711 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 PGAP1Q75T13 922 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 RHOUQ7L0Q8 258 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 MEPCEQ7L2J0 689 aaKnown RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 SLC16A9Q7RTY1 509 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 GID4Q8IVV7 300 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 PQLC1Q8N2U9 271 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CBR4Q8N4T8 237 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 OR8G5Q8NG78 346 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 OR2Z1Q8NG97 314 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 YIPF5Q969M3 257 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 IL4I1Q96RQ9 567 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 CNN2Q99439 309 aaKnown RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 TEAD3Q99594 435 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 YIPF3Q9GZM5 350 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 OPA3Q9H6K4 179 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 ZNF275Q9NSD4 429 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-203ENST00000435823 LAMP5Q9UJQ1 280 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 N6AMT1Q9Y5N5 214 aa9.74□□□□□ -0.85
COL28A1-203ENST00000435823 MTORP42345 2549 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 IGHV4-61A0A0C4DH41 118 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 CCDC182A6NF36 153 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 IQCF6A8MYZ5 107 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 M0R129 80 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 TBX1O43435 398 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 PPIHO43447 177 aaKnown RBP9.73□□□□□ -0.85
COL28A1-203ENST00000435823 XRCC2O43543 280 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 CD5LO43866 347 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 RP2O75695 350 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 ALPLP05186 524 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 ANXA2P07355 339 aaKnown RBP9.73□□□□□ -0.85
COL28A1-203ENST00000435823 MRPL3P09001 348 aaKnown RBP9.73□□□□□ -0.85
COL28A1-203ENST00000435823 SLC2A1P11166 492 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 TNFRSF1AP19438 455 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 POLR2IP36954 125 aaKnown RBP9.73□□□□□ -0.85
COL28A1-203ENST00000435823 OPRL1P41146 370 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 GZMKP49863 264 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 RIPPLY3P57055 190 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 SLC3A1Q07837 685 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 SNAI3Q3KNW1 292 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 AADACL4Q5VUY2 407 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 KCTD18Q6PI47 426 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-203ENST00000435823 KRT77Q7Z794 578 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 OR8J1Q8NGP2 316 aa9.73□□□□□ -0.85
COL28A1-203ENST00000435823 OR13G1Q8NGZ3 307 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms