RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MED8Q96G25 268 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF75AQ96N20 296 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 SCGB3A2Q96PL1 93 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 TSNAXQ99598 290 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 TSG101Q99816 390 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 KLHDC3Q9BQ90 382 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 Q9H3A6 140 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 PLEKHA1Q9HB21 404 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 CFL2Q9Y281 166 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 PRG3Q9Y2Y8 225 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 RAD50Q92878 1312 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 TDRD6O60522 2096 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 COL22A1Q8NFW1 1626 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 A0A0B4J2A0 478 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 K7ENP7 123 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 DFFAO00273 331 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 ENSAO43768 121 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 ICOSLGO75144 302 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 HPRT1P00492 218 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 TIMP1P01033 207 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 GCGP01275 180 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR8U9P0C7N5 309 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 CD1EP15812 388 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RAB4AP20338 218 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 MAS1LP35410 378 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 ARL2P36404 184 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 GPR6P46095 362 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 CSNK1DP48730 415 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 SERPINB8P50452 374 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RAB7AP51149 207 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RPL31P62899 125 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR7A5Q15622 319 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 GOLGA7BQ2TAP0 167 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 BSXQ3C1V8 233 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 COQ5Q5HYK3 327 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2B11Q5JQS5 317 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 KLF17Q5JT82 389 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 WDR74Q6RFH5 385 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 CD300LGQ6UXG3 332 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RDH10Q8IZV5 341 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2Y1Q8NGV0 311 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR8U1Q8NH10 309 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RORBQ92753 470 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 DUS3LQ96G46 650 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RBBP8Q99708 897 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF426Q9BUY5 554 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 OR51J1Q9H342 316 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 WDR55Q9H6Y2 383 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 RNF167Q9H6Y7 350 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 METTL8Q9H825 291 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 TREM2Q9NZC2 230 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 CD274Q9NZQ7 290 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 SHPKQ9UHJ6 478 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 ATPIF1Q9UII2 106 aa3.84□□□□□ -1.79
CCDC88A-206ENST00000430086 A0A1B0GVI7 797 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 A6NDN8 102 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 GOLGA8JA6NMD2 632 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CENPBD1B2RD01 187 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 GOLGA8KD6RF30 607 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 F6UB75 175 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 GOLGA8MH3BSY2 632 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 K7EN84 100 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 M0QXV9 152 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CDC40O60508 579 aaKnown RBP eCLIP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PSIP1O75475 530 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 RPP14O95059 124 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 BRI3O95415 125 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PSMG1O95456 288 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 GOLGA8HP0CJ92 632 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CDKN2CP42773 168 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 RORCP51449 518 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 WNT4P56705 351 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PAFAH1B2P68402 229 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC25A11Q02978 314 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PDIA2Q13087 525 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 TPBGQ13641 420 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 POU2AF1Q16633 256 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 ACTL10Q5JWF8 245 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CCNJQ5T5M9 372 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 SDHAF4Q5VUM1 108 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 RESP18Q5W5W9 173 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 OTPQ5XKR4 325 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 FRMPD2BQ6IN97 320 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CNIH2Q6PI25 160 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 MBOAT2Q6ZWT7 520 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 MRPL52Q86TS9 123 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 HSD17B11Q8NBQ5 300 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 OR10R2Q8NGX6 335 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 APH1BQ8WW43 257 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CDS1Q92903 461 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PPWD1Q96BP3 646 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 S100PBPQ96BU1 408 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 IMMP1LQ96LU5 166 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 SH3GL3Q99963 347 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 AGMATQ9BSE5 352 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 NXF3Q9H4D5 531 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 CALYQ9NYX4 217 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 MSH6P52701 1360 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 PLB1Q6P1J6 1458 aa3.83□□□□□ -1.8
CCDC88A-206ENST00000430086 WI2-2373I1.2A0A1W2PRP0 233 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms