RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 LCATP04180 440 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 SELEP16581 610 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 ECH1Q13011 328 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 C1orf229Q6ZS94 237 aaPredicted RBP16.07■□□□□ 0.16
SF3A1-202ENST00000411423 GLCCI1Q86VQ1 547 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 ATG16L2Q8NAA4 619 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 OR6K6Q8NGW6 343 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF420Q8TAQ5 688 aaPredicted RBP16.07■□□□□ 0.16
SF3A1-202ENST00000411423 TEX47Q8TBZ9 253 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 RAB1CQ92928 201 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF799Q96GE5 643 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 AMELYQ99218 206 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 SLC30A2Q9BRI3 323 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 IL19Q9UHD0 177 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 NPTNQ9Y639 398 aa16.07■□□□□ 0.16
SF3A1-202ENST00000411423 A0A1B0GWJ7 208 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 TIPRLO75663 272 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 HLA-DPB1P04440 258 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 POU1F1P28069 291 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 FMO3P31513 532 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 CDK5Q00535 292 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 GINS1Q14691 196 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 TEX30Q5JUR7 227 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 TMEM236Q5W0B7 351 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 SPATC1Q76KD6 591 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 OR51F2Q8NH61 342 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 OR2AE1Q8NHA4 323 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 UTP4Q969X6 686 aaKnown RBP16.06■□□□□ 0.16
SF3A1-202ENST00000411423 SLAMF6Q96DU3 332 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 MEGF10Q96KG7 1140 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF582Q96NG8 517 aaPredicted RBP16.06■□□□□ 0.16
SF3A1-202ENST00000411423 GCM1Q9NP62 436 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 DNAJB9Q9UBS3 223 aa16.06■□□□□ 0.16
SF3A1-202ENST00000411423 ISPDA4D126 451 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 RIIAD1A6NNX1 92 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 F5H5P2 479 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 SURF4O15260 269 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 IFNGP01579 166 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 SLC2A1P11166 492 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 OSMP13725 252 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF3P17036 446 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 PMELP40967 661 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 MMP16P51512 607 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 PRKXP51817 358 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 TPTEP56180 551 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 HOXA4Q00056 320 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF92Q03936 586 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 GLYATL3Q5SZD4 288 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 PHC2Q8IXK0 858 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 TIMD4Q96H15 378 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 GAL3ST1Q99999 423 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 MARCH7Q9H992 704 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 CENPMQ9NSP4 180 aa16.05■□□□□ 0.16
SF3A1-202ENST00000411423 E2F6O75461 281 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 SBK2P0C263 348 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 HNF1AP20823 631 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 TNFSF4P23510 183 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 ZFP36P26651 326 aaKnown RBP16.04■□□□□ 0.16
SF3A1-202ENST00000411423 SEC61A1P61619 476 aaKnown RBP16.04■□□□□ 0.16
SF3A1-202ENST00000411423 ZMYND11Q15326 602 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 KRTAP24-1Q3LI83 254 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 SLC27A4Q6P1M0 643 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 TIGD4Q8IY51 512 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 BBS1Q8NFJ9 593 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 OR13G1Q8NGZ3 307 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 OTULINQ96BN8 352 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 COPS4Q9BT78 406 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 UBAP1Q9NZ09 502 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 PPP1R3CQ9UQK1 317 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 ARHGAP32A7KAX9 2087 aa16.04■□□□□ 0.16
SF3A1-202ENST00000411423 RNF212BA8MTL3 300 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 TMEM178BH3BS89 294 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 GLCEO94923 617 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF205O95201 554 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 CYB5R3P00387 301 aaPredicted RBP16.03■□□□□ 0.16
SF3A1-202ENST00000411423 TNFRSF1AP19438 455 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 THBS2P35442 1172 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 SLC6A9P48067 706 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 DAPP51397 102 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 SLC3A1Q07837 685 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 MAB21L1Q13394 359 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 EIF2B1Q14232 305 aaKnown RBP16.03■□□□□ 0.16
SF3A1-202ENST00000411423 PLBD1Q6P4A8 553 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 SHQ1Q6PI26 577 aaKnown RBP16.03■□□□□ 0.16
SF3A1-202ENST00000411423 DPY19L4Q7Z388 723 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 ERI1Q8IV48 349 aaKnown RBP16.03■□□□□ 0.16
SF3A1-202ENST00000411423 OR6N2Q8NGY6 317 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 SPTSSAQ969W0 71 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 RAB39BQ96DA2 213 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 ZMYND19Q96E35 227 aaPredicted RBP16.03■□□□□ 0.16
SF3A1-202ENST00000411423 KCNJ15Q99712 375 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 ABHD6Q9BV23 337 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 TMPRSS13Q9BYE2 586 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 OR51V1Q9H2C8 321 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 TMEM100Q9NV29 134 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 COL6A5A8TX70 2615 aa16.03■□□□□ 0.16
SF3A1-202ENST00000411423 TRAV20A0A0B4J274 112 aa16.02■□□□□ 0.16
SF3A1-202ENST00000411423 ZNF878C9JN71 531 aa16.02■□□□□ 0.16
SF3A1-202ENST00000411423 SELENOFO60613 162 aa16.02■□□□□ 0.16
SF3A1-202ENST00000411423 ANXA8P13928 327 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms