RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ABHD3Q8WU67 409 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 C17orf50Q8WW18 174 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 MAL2Q969L2 176 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 APH1AQ96BI3 265 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 MUCL1Q96DR8 90 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 SLC47A1Q96FL8 570 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 DUS3LQ96G46 650 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 POTEKPQ9BYX7 375 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 COQ10BQ9H8M1 238 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 C12orf10Q9HB07 376 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CD300AQ9UGN4 299 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OSGIN1Q9UJX0 560 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 PCNX3Q9H6A9 2034 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 ARPC4-TTLL3A0A0A6YYG9 625 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 TCRBV3S1A0A5B6 114 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 OR6C65A6NJZ3 312 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 CLDN24A6NM45 220 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 M0QX08 132 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 GKN3PP0CG01 181 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 SLC7A2P52569 658 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 MS4A2Q01362 244 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 MED21Q13503 144 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 KEAP1Q14145 624 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 ULK3Q6PHR2 472 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 DHRS4L2Q6PKH6 230 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 PAQR6Q6TCH4 344 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 PLXDC2Q6UX71 529 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 DHFR2Q86XF0 187 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 AQP12AQ8IXF9 295 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 OR8J3Q8NGG0 315 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 LZICQ8WZA0 190 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 HSD17B8Q92506 261 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 PROX1Q92786 737 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 SLC38A4Q969I6 547 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 FNDC11Q9BVV2 318 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 SRXN1Q9BYN0 137 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 SLC25A37Q9NYZ2 338 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 RIMS3Q9UJD0 308 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 AP4S1Q9Y587 144 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 ANKRD17O75179 2603 aaKnown RBP5.47□□□□□ -1.53
USP40-202ENST00000409945 APCP25054 2843 aa5.47□□□□□ -1.53
USP40-202ENST00000409945 MYO9AB2RTY4 2548 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 IGHV3-15A0A0B4J1V0 119 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 CIB4A0PJX0 185 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 H0YJX3 145 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 E2F6O75461 281 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 CGAP01215 116 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 TCN1P20061 433 aaPredicted RBP5.46□□□□□ -1.53
USP40-202ENST00000409945 PSMB1P20618 241 aaKnown RBP5.46□□□□□ -1.53
USP40-202ENST00000409945 CBLP22681 906 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 SHC1P29353 583 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 AQP1P29972 269 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 OR3A2P47893 321 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 MTPNP58546 118 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 DSCR9P59020 149 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 GUSBP1Q15486 140 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 OR7A5Q15622 319 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 VWC2Q2TAL6 325 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 BEX5Q5H9J7 111 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 OTUD3Q5T2D3 398 aaPredicted RBP5.46□□□□□ -1.53
USP40-202ENST00000409945 C1orf140Q5VVS0 124 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 PRSS57Q6UWY2 283 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 CASP12Q6UXS9 341 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 DLEU7Q6UYE1 221 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 Q6ZT83 130 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 CENPVQ7Z7K6 275 aaPredicted RBP5.46□□□□□ -1.53
USP40-202ENST00000409945 P2RY8Q86VZ1 359 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 RNF148Q8N7C7 305 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 OR10A6Q8NH74 314 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 LRRC58Q96CX6 371 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 PSD2Q9BQI7 771 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 OR11A1Q9GZK7 315 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 ACTR6Q9GZN1 396 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 ADPRHL2Q9NX46 363 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 RAB26Q9ULW5 256 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 RASD1Q9Y272 281 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 HEATR5AQ86XA9 2040 aa5.46□□□□□ -1.53
USP40-202ENST00000409945 TACC2O95359 2948 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 IGKV3D-15A0A087WSY6 115 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 TMEM72A0PK05 275 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 FXYD1O00168 92 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 EFNA2O43921 213 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 FMO6PO60774 539 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 OR6A2O95222 327 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 RAF1P04049 648 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 ZNF43P17038 809 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 GGT1P19440 569 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 CRYGSP22914 178 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 PCGF2P35227 344 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 ACAA2P42765 397 aaKnown RBP5.46□□□□□ -1.54
USP40-202ENST00000409945 MMP15P51511 669 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 AQP4P55087 323 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 C1DQ13901 141 aaKnown RBP5.46□□□□□ -1.54
USP40-202ENST00000409945 VEZF1Q14119 521 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 LRRC36Q1X8D7 754 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 FBXW9Q5XUX1 488 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 LPCAT4Q643R3 524 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 LCN8Q6JVE9 175 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 NANOGP8Q6NSW7 305 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 CDC20BQ86Y33 519 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms