RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ADAM19Q9H013 955 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 MMP28Q9H239 520 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 OTOGLQ3ZCN5 2332 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 FAM90A27PA6NNH2 459 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 MCRIP1C9JLW8 97 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 CREBL2O60519 120 aaPredicted RBP8.09□□□□□ -1.11
LIG4-202ENST00000405925 NRASP01111 189 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 MT-ND4P03905 459 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 PMPCAQ10713 525 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 OR8G1Q15617 311 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 PCK2Q16822 640 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 TBRG1Q3YBR2 411 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 FOXB2Q5VYV0 432 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 OR1J1Q8NGS3 322 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 HAVCR1Q96D42 359 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 CDX4O14627 284 aaPredicted RBP8.09□□□□□ -1.11
LIG4-202ENST00000405925 PTP4A3O75365 173 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 UBL3O95164 117 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 ASAH2BP0C7U1 165 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 AKAIN1P0CW23 69 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 GIFP27352 417 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 LIMS1P48059 325 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 PRSS12P56730 875 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 DOC2BQ14184 412 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 INSL4Q14641 139 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 RAB35Q15286 201 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 ZNF468Q5VIY5 522 aaPredicted RBP8.09□□□□□ -1.11
LIG4-202ENST00000405925 STAC2Q6ZMT1 411 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 GALNT11Q8NCW6 608 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 OR2AE1Q8NHA4 323 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 ZPLD1Q8TCW7 415 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 EXTL1Q92935 676 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 UBL7Q96S82 380 aaPredicted RBP8.09□□□□□ -1.11
LIG4-202ENST00000405925 COPS3Q9UNS2 423 aa8.09□□□□□ -1.11
LIG4-202ENST00000405925 UBE2J1Q9Y385 318 aaPredicted RBP8.09□□□□□ -1.11
LIG4-202ENST00000405925 DNPH1O43598 174 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 TOXO94900 526 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 CCL2P13500 99 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 IL2RGP31785 369 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 GDNFP39905 211 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 ZNF83P51522 516 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 ZNF718Q3SXZ3 478 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 IQCF2Q8IXL9 164 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 DYNC2LI1Q8TCX1 351 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 RNF128Q8TEB7 428 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 CREB3L1Q96BA8 519 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 DERL3Q96Q80 235 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 VRK1Q99986 396 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 ZNF175Q9Y473 711 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 ETV7Q9Y603 341 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 IFITM5A6NNB3 132 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 NPIPB9F8W1W9 429 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 ARPC1BO15143 372 aaKnown RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 ZNF780AO75290 641 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 KLF7O75840 302 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 CNOT4O95628 575 aaKnown RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 DEGS2Q6QHC5 323 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 METAP1DQ6UB28 335 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 DRAM2Q6UX65 266 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 OR8H1Q8NGG4 311 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 THAP6Q8TBB0 222 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 TRIM63Q969Q1 353 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 APOBEC3DQ96AK3 386 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 NKX3-1Q99801 234 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 PSD2Q9BQI7 771 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 EHFQ9NZC4 300 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 MGAT4CQ9UBM8 478 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 EXOGQ9Y2C4 368 aaKnown RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 SESN1Q9Y6P5 492 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 C2orf16Q68DN1 1984 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 EPPINO95925 133 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 UBBP0CG47 229 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 RAC2P15153 192 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 CD79BP40259 229 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 LTC4SQ16873 150 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 CREB3L2Q70SY1 520 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 SSX6Q7RTT6 188 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 BPIFB2Q8N4F0 458 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 INO80EQ8NBZ0 244 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 NFAM1Q8NET5 270 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 OR6F1Q8NGZ6 308 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 OR51F2Q8NH61 342 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 RTL8AQ9BWD3 113 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 RAB22AQ9UL26 194 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 A3GALT2U3KPV4 340 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 PCNTO95613 3336 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 AIPO00170 330 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 DXOO77932 396 aaKnown RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 AKR1C2P52895 323 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 TAS2R19P59542 299 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 TNK1Q13470 666 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 SSX1Q16384 188 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 HAGHLQ6PII5 290 aaPredicted RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 PRSS45Q7RTY3 260 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 EMG1Q92979 244 aaKnown RBP8.08□□□□□ -1.12
LIG4-202ENST00000405925 HGDQ93099 445 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 SIGLEC12Q96PQ1 595 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 DECR2Q9NUI1 292 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 HAO2Q9NYQ3 351 aa8.08□□□□□ -1.12
LIG4-202ENST00000405925 TAS2R5Q9NYW4 299 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms