RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ALOX5APP20292 161 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 HSD11B1P28845 292 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 MRPS11P82912 194 aaKnown RBP18.5■□□□□ 0.55
CLN3-207ENST00000395653 HLXQ14774 488 aaPredicted RBP18.5■□□□□ 0.55
CLN3-207ENST00000395653 CARTPTQ16568 116 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 ZIK1Q3SY52 487 aaPredicted RBP18.5■□□□□ 0.55
CLN3-207ENST00000395653 ZNF283Q8N7M2 679 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 FAM81AQ8TBF8 368 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 DIRC2Q96SL1 478 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 CNN2Q99439 309 aaKnown RBP18.5■□□□□ 0.55
CLN3-207ENST00000395653 HAO2Q9NYQ3 351 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 ZDHHC8Q9ULC8 765 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 A0A096LNT2 108 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 VWC2LB2RUY7 222 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 SMAD7O15105 426 aaKnown RBP18.49■□□□□ 0.55
CLN3-207ENST00000395653 IGHV1-46P01743 117 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 MRPL3P09001 348 aaKnown RBP18.49■□□□□ 0.55
CLN3-207ENST00000395653 H2BFMP0C1H6 154 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 ANPEPP15144 967 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 GK2Q14410 553 aaPredicted RBP18.49■□□□□ 0.55
CLN3-207ENST00000395653 RCN1Q15293 331 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 ZNF540Q8NDQ6 660 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 RDH5Q92781 318 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 MBOAT4Q96T53 435 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 IMPAD1Q9NX62 359 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 LAMP5Q9UJQ1 280 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 KLHDC2Q9Y2U9 406 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 TMEM14AQ9Y6G1 99 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 MTORP42345 2549 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 SPRY3O43610 288 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 SELEP16581 610 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 GIFP27352 417 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 CX3CR1P49238 355 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 CCL8P80075 99 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 CDK5R2Q13319 367 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 SNAI3Q3KNW1 292 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 MNTQ99583 582 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 SP140LQ9H930 580 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 MSL2Q9HCI7 577 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 DECR2Q9NUI1 292 aa18.49■□□□□ 0.55
CLN3-207ENST00000395653 WARS2Q9UGM6 360 aaKnown RBP18.49■□□□□ 0.55
CLN3-207ENST00000395653 CHD3Q12873 2000 aaKnown RBP18.48■□□□□ 0.55
CLN3-207ENST00000395653 CD55P08174 381 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 ACHEP22303 614 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 HTR1FP30939 366 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 NR4A2P43354 598 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 LOXL1Q08397 574 aaPredicted RBP18.48■□□□□ 0.55
CLN3-207ENST00000395653 TMED1Q13445 227 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 TSTQ16762 297 aaKnown RBP18.48■□□□□ 0.55
CLN3-207ENST00000395653 OR2T2Q6IF00 324 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 KCTD18Q6PI47 426 aaPredicted RBP18.48■□□□□ 0.55
CLN3-207ENST00000395653 PGAP1Q75T13 922 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.48■□□□□ 0.55
CLN3-207ENST00000395653 CHODLQ9H9P2 273 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 SAP30LQ9HAJ7 183 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 ADGRL4Q9HBW9 690 aa18.48■□□□□ 0.55
CLN3-207ENST00000395653 IQCF6A8MYZ5 107 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 LYNX1G3V0Z9 82 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 LYNX1P0DP58 116 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 SLC2A1P11166 492 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 ANOS1P23352 680 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 HCCSP53701 268 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 RIN1Q13671 783 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 TRIP10Q15642 601 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 SLC25A30Q5SVS4 291 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 DEGS2Q6QHC5 323 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 LRRN1Q6UXK5 716 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 Q6ZR03 302 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 PRSS45Q7RTY3 260 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 MRPL21Q7Z2W9 205 aaKnown RBP18.47■□□□□ 0.55
CLN3-207ENST00000395653 OR8G5Q8NG78 346 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 ASB17Q8WXJ9 295 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 RFKQ969G6 155 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 ZNF582Q96NG8 517 aaPredicted RBP18.47■□□□□ 0.55
CLN3-207ENST00000395653 RDH12Q96NR8 316 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 NIPAL2Q9H841 368 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 C8orf4Q9NR00 106 aa18.47■□□□□ 0.55
CLN3-207ENST00000395653 ZANQ9Y493 2812 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 ERICH4A6NGS2 130 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 TPD52L2O43399 206 aaKnown RBP18.46■□□□□ 0.55
CLN3-207ENST00000395653 XRCC2O43543 280 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 ANXA2P07355 339 aaKnown RBP18.46■□□□□ 0.55
CLN3-207ENST00000395653 SBK2P0C263 348 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 COL8A2P25067 703 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 CRYBB2P43320 205 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 SNRPGP62308 76 aaKnown RBP18.46■□□□□ 0.55
CLN3-207ENST00000395653 POU4F2Q12837 409 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 GLYATL3Q5SZD4 288 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 USP51Q70EK9 711 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 KRT77Q7Z794 578 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 OR5AS1Q8N127 324 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 MAPK1IP1LQ8NDC0 245 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 OR2AE1Q8NHA4 323 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 SMR3AQ99954 134 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 BPESC1Q9GZL8 116 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 EGLN1Q9GZT9 426 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 OPA3Q9H6K4 179 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 DNAJC27Q9NZQ0 273 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 GMPPBQ9Y5P6 360 aa18.46■□□□□ 0.55
CLN3-207ENST00000395653 C5orf63A6NC05 138 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms