RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 QDPRP09417 244 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 PRKXP51817 358 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 DHODHQ02127 395 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 C17orf107Q6ZR85 190 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 OR10H5Q8NGA6 315 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 OR13C9Q8NGT0 318 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 AQP3Q92482 292 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 EDAQ92838 391 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 SLC6A7Q99884 636 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 POFUT1Q9H488 388 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 SMOC1Q9H4F8 434 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 TAS2R8Q9NYW2 309 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 SDK2Q58EX2 2172 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 NTN3O00634 580 aaPredicted RBP11.83□□□□□ -0.51
CCDC3-202ENST00000378839 SYT7O43581 403 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 GIPP09681 153 aaPredicted RBP11.83□□□□□ -0.51
CCDC3-202ENST00000378839 VSIG8P0DPA2 414 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 POU3F2P20265 443 aaPredicted RBP11.83□□□□□ -0.51
CCDC3-202ENST00000378839 GNALP38405 381 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF260Q3ZCT1 412 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 SFRP5Q5T4F7 317 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 OR1M1Q8NGA1 313 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 OR8B12Q8NGG6 310 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 OR13C8Q8NGS7 320 aa11.83□□□□□ -0.51
CCDC3-202ENST00000378839 ARPC4-TTLL3A0A0A6YYG9 625 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 AQP7P3A6NL99 342 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 ZIC3O60481 467 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 IGHG1P01857 330 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF35P13682 527 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 BDKRB2P30411 391 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 UXS1Q8NBZ7 420 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 ADPRHL1Q8NDY3 354 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OR4K17Q8NGC6 315 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OR6X1Q8NH79 312 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 NTNG2Q96CW9 530 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 UCN2Q96RP3 112 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 NICN1Q9BSH3 213 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OPN4Q9UHM6 478 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 PTRH2Q9Y3E5 179 aaKnown RBP11.83□□□□□ -0.52
CCDC3-202ENST00000378839 PCSK5Q92824 1860 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 A0A0A6YYD4 124 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 PMS2P1A4D2B8 440 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 HOXA6P31267 233 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF121P58317 390 aaPredicted RBP11.83□□□□□ -0.52
CCDC3-202ENST00000378839 H3F3AP84243 136 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 ZFP36L1Q07352 338 aaKnown RBP11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OR52W1Q6IF63 320 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 CRIP3Q6Q6R5 217 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 IDO2Q6ZQW0 420 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 COMMD7Q86VX2 200 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 WDR5BQ86VZ2 330 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OR5AS1Q8N127 324 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM229BQ8NBD8 167 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 OXGR1Q96P68 337 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 WDR54Q9H977 334 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 C19orf25Q9UFG5 118 aaPredicted RBP11.83□□□□□ -0.52
CCDC3-202ENST00000378839 FBXO4Q9UKT5 387 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 AUP1Q9Y679 476 aa11.83□□□□□ -0.52
CCDC3-202ENST00000378839 GOSR2O14653 212 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 RGS11O94810 467 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 RAB3DO95716 219 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 FAUP35544 74 aaKnown RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 AKR1D1P51857 326 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 IKZF1Q13422 519 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 OR2AK2Q8NG84 335 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 NAT6Q93015 286 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 MR1Q95460 341 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 C1orf147Q96MC9 270 aaPredicted RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF385AQ96PM9 386 aaKnown RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 EXO5Q9H790 373 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 SH2D2AQ9NP31 389 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF230Q9UIE0 474 aaPredicted RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 A0A0G2JMM0 328 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 A0A1W2PP11 408 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 A0A1W2PPB8 328 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 A0A1W2PRS3 328 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 MEGF11A6BM72 1044 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 LINC00862A6NCI5 91 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 KIR3DP1A8MWS1 328 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 MCRIP1C9JLW8 97 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 CSN2P05814 226 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 CD63P08962 238 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 IL11RAQ14626 422 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 FJX1Q86VR8 437 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 NUDCD2Q8WVJ2 157 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 PNPLA2Q96AD5 504 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 ELMOD3Q96FG2 381 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF700Q9H0M5 742 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 GPN1Q9HCN4 374 aaPredicted RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 PISDQ9UG56 409 aa11.82□□□□□ -0.52
CCDC3-202ENST00000378839 FARSAQ9Y285 508 aaKnown RBP11.82□□□□□ -0.52
CCDC3-202ENST00000378839 CCDC163A0A0D9SF12 145 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 OR14I1A6ND48 311 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 SULT2B1O00204 365 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 SMAD9O15198 467 aaKnown RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 CD74P04233 296 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 GNB3P16520 340 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 HSD11B1P28845 292 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ARHGDIBP52566 201 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 CLDN17P56750 224 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms