RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 FABP1P07148 127 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 RPS27P42677 84 aaKnown RBP13.47□□□□□ -0.25
CHD4-201ENST00000357008 ACOT6Q3I5F7 207 aaPredicted RBP13.47□□□□□ -0.25
CHD4-201ENST00000357008 FAM27D1Q5T7N8 215 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 CA13Q8N1Q1 262 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 NECAP1Q8NC96 275 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 RPUSD4Q96CM3 377 aaKnown RBP13.47□□□□□ -0.25
CHD4-201ENST00000357008 CDCP1Q9H5V8 836 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 OPA3Q9H6K4 179 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 SLC35D1Q9NTN3 355 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 DSCR3O14972 297 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 WNT11O96014 354 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 EMP3P54852 163 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 DHODHQ02127 395 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 RBPJQ06330 500 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 ARL16Q0P5N6 197 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 TIGITQ495A1 244 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 LAIR1Q6GTX8 287 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 OR1J1Q8NGS3 322 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 TVP23CQ96ET8 276 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 SLC35E1Q96K37 410 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 TMEM30AQ9NV96 361 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 IGHV3-20A0A0C4DH32 117 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 VEGFBP49765 207 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 NKAIN1Q4KMZ8 207 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 RTN4RL1Q86UN2 441 aaPredicted RBP13.47□□□□□ -0.25
CHD4-201ENST00000357008 ARHGEF39Q8N4T4 335 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 C16orf52Q8NHV5 167 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 C12orf10Q9HB07 376 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 RHOFQ9HBH0 211 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 SLC23A1Q9UHI7 598 aa13.47□□□□□ -0.25
CHD4-201ENST00000357008 PYCARD-AS1I3L0S3 204 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SELEP16581 610 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 IL10RAQ13651 578 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 C11orf87Q6NUJ2 197 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SOX7Q9BT81 388 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SLC17A2O00624 439 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 NRASP01111 189 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 ACSM4P0C7M7 580 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 GALP22466 123 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 TAS2R45P59539 299 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 AGERQ15109 404 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 CISD2Q8N5K1 135 aaKnown RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 TMEM178AQ8NBL3 297 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 OR5M1Q8NGP8 315 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 GAR1Q9NY12 217 aaKnown RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 SLCO1C1Q9NYB5 712 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 DVL1O14640 695 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 WDR1O75083 606 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 AQP8O94778 261 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 NME1P15531 152 aaKnown RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 DVL1P1P54792 670 aaPredicted RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 OR1D5P58170 312 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 BAMBIQ13145 260 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 TMEM128Q5BJH2 165 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SIGLECL1Q8N7X8 197 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 ANKRD53Q8N9V6 530 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 DOK1Q99704 481 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 DLL4Q9NR61 685 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 LIN7CQ9NUP9 197 aaKnown RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 RAB27BO00194 218 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 FZD6O60353 706 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 CD27P26842 260 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 RAC1P63000 192 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SIGIRRQ6IA17 410 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 SIRT6Q8N6T7 355 aa13.46□□□□□ -0.25
CHD4-201ENST00000357008 RTN4IP1Q8WWV3 396 aaPredicted RBP13.46□□□□□ -0.25
CHD4-201ENST00000357008 G3V3Q6 166 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 F10P00742 488 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 COX5AP20674 150 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 PIGPP57054 158 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 PNLIPRP3Q17RR3 467 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 LINC00696Q6ZRV3 163 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 DND1Q8IYX4 353 aaKnown RBP13.46□□□□□ -0.26
CHD4-201ENST00000357008 OR5B3Q8NH48 314 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 PPP1R3CQ9UQK1 317 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 NWD2Q9ULI1 1742 aa13.46□□□□□ -0.26
CHD4-201ENST00000357008 B3GALNT1O75752 331 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 RAG2P55895 527 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 SPNS2Q8IVW8 549 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 BATF2Q8N1L9 274 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 COMMD1Q8N668 190 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 CNRIP1Q96F85 164 aaPredicted RBP13.45□□□□□ -0.26
CHD4-201ENST00000357008 LANCL2Q9NS86 450 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 YKT6O15498 198 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 ZNF468Q5VIY5 522 aaPredicted RBP13.45□□□□□ -0.26
CHD4-201ENST00000357008 RSPO2Q6UXX9 243 aaPredicted RBP13.45□□□□□ -0.26
CHD4-201ENST00000357008 SPPL3Q8TCT6 385 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 ZNF355PQ9NSJ1 428 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 MRPL22Q9NWU5 206 aaKnown RBP13.45□□□□□ -0.26
CHD4-201ENST00000357008 CYB5R1Q9UHQ9 305 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 A4GNTQ9UNA3 340 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 FOXJ3Q9UPW0 622 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 ASPDHA6ND91 283 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 H0YIG0 161 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 SH2D1BO14796 132 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 ICOSLGO75144 302 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 MRPL58Q14197 206 aaKnown RBP13.45□□□□□ -0.26
CHD4-201ENST00000357008 FAM162BQ5T6X4 162 aa13.45□□□□□ -0.26
CHD4-201ENST00000357008 ARRDC1Q8N5I2 433 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms