RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ACER3Q9NUN7 267 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ZNF629Q9UEG4 869 aaPredicted RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 TBC1D29Q9UFV1 150 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ZNF391Q9UJN7 358 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 FOXJ3Q9UPW0 622 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 SHISA7A6NL88 538 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 SLC25A6P12236 298 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 HIST1H1CP16403 213 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 PSMB6P28072 239 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 FCGR2CP31995 323 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 SLC6A12P48065 614 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TAGLNQ01995 201 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 EIF3IQ13347 325 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 IGFBP7Q16270 282 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TMEM268Q5VZI3 342 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TRNP1Q6NT89 227 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 DTWD2Q8NBA8 298 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 NOXO1Q8NFA2 376 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 OR10Z1Q8NGY1 313 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 OR52N5Q8NH56 324 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 WBP2Q969T9 261 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 APOBEC3DQ96AK3 386 aaPredicted RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 GALMQ96C23 342 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 C2orf50Q96LR7 162 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 WDR61Q9GZS3 305 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 UFSP2Q9NUQ7 469 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TRGV8A0A0C4DH27 118 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 LILRA5A6NI73 299 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ZNF727A8MUV8 499 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 OR7C2O60412 319 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TNFSF15O95150 251 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 KLKB1P03952 638 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 RPL12P30050 165 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 LIPAP38571 399 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 RPL18Q07020 188 aaKnown RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 SLC17A1Q14916 467 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 DEFB109BQ30KR1 87 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ZNF385BQ569K4 471 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ADAM5Q6NVV9 412 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 H3F3CQ6NXT2 135 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 OSR2Q8N2R0 312 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 KLHDC1Q8N7A1 406 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 UBAC2Q8NBM4 344 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 SMIM19Q96E16 107 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 LURAP1Q96LR2 239 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ARHGDIGQ99819 225 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 AAMDCQ9H7C9 122 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 UBR2Q8IWV8 1755 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 A0A1W2PR48 441 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TMEM30CPA0ZSE6 113 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 SERPINE3A8MV23 424 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 G3V3Q6 166 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 HPP00738 406 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 IGHV3-9P01782 118 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 CLEC2LP0C7M8 214 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ATF1P18846 271 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 TOMM34Q15785 309 aaPredicted RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 AMIGO3Q86WK7 504 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 LINC00615Q96LM1 132 aaPredicted RBP5.87□□□□□ -1.47
UPF2-201ENST00000356352 C10orf90Q96M02 699 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 NRSN2Q9GZP1 204 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 CLEC2DQ9UHP7 191 aa5.87□□□□□ -1.47
UPF2-201ENST00000356352 RGPD8O14715 1765 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 A0A1B0GUH1 482 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 ZAR1LA6NP61 321 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 TNFSF11O14788 317 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 FGF17O60258 216 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 WDR1O75083 606 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 ADRB1P08588 477 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 ZNF26P17031 533 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 PCSK6P29122 969 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 MDH2P40926 338 aaKnown RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 SSX9Q7RTT3 188 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 CELF2-AS1Q8N7Q2 184 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 OR52I2Q8NH67 350 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 LHX4Q969G2 390 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 GRAMD2BQ96HH9 432 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 TMEM56Q96MV1 263 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 FAM173AQ9BQD7 235 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 ZMAT3Q9HA38 289 aaKnown RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 RAB18Q9NP72 206 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 HCSTQ9UBK5 93 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 PPT2Q9UMR5 302 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 AMMECR1Q9Y4X0 333 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 N4BP2Q86UW6 1770 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 SIGLEC1Q9BZZ2 1709 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 MYH3P11055 1940 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 A0A1W2PPC4 97 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 NME2P1O60361 137 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 RPS19P39019 145 aaKnown RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 SUMO1P63165 101 aaKnown RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 INSM1Q01101 510 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 RPUSD3Q6P087 351 aaKnown RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 LYG2Q86SG7 212 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 SPEM1Q8N4L4 309 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 TMEM99Q8N816 258 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 DYNC2LI1Q8TCX1 351 aa5.86□□□□□ -1.47
UPF2-201ENST00000356352 NEIL1Q96FI4 390 aaPredicted RBP5.86□□□□□ -1.47
UPF2-201ENST00000356352 MED30Q96HR3 178 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms