RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 UPK3BL1B0FP48 263 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 UPK3BL2E5RIL1 263 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ST8SIA5O15466 376 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 NXPH3O95157 252 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ARSDP51689 593 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 TMEM106CQ9BVX2 250 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 RNF19AQ9NV58 838 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 FCF1Q9Y324 198 aaKnown RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 IER3IP1Q9Y5U9 82 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 TRAV36DV7A0A075B6V5 113 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 KLK3P07288 261 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 PGA4P0DJD7 388 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 PGA5P0DJD9 388 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ARR3P36575 388 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 TGFBR3Q03167 851 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 DLX2Q07687 328 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 PAFAH1B3Q15102 231 aaKnown RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 TARBP2Q15633 366 aaKnown RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 DNLZQ5SXM8 178 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 LCN15Q6UWW0 184 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 NPSR1Q6W5P4 371 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 LRRTM3Q86VH5 581 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 PNPLA1Q8N8W4 532 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 C1orf74Q96LT6 269 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ATF6BQ99941 703 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ZSWIM8A7E2V4 1837 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 LOC107984156A0A0G2JMH3 177 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 GPR32O75388 356 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 USP2O75604 605 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 GYPAP02724 150 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 LIPFP07098 398 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 NDUFB7P17568 137 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 CALHM1Q8IU99 346 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ARL17AQ8IVW1 177 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 UBALD2Q8IYN6 164 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 TEX29Q8N6K0 151 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SMIM4Q8WVI0 70 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SOCS4Q8WXH5 440 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SMIM19Q96E16 107 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SEH1LQ96EE3 360 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 RBM24Q9BX46 236 aaKnown RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 NOX4Q9NPH5 578 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 GPR55Q9Y2T6 319 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 TECPR2O15040 1411 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 RBFOX3A6NFN3 312 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 MAN2B1O00754 1011 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 FAM87AP0C7U9 286 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ACHEP22303 614 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 BLVRBP30043 206 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 PTPRCAPQ14761 206 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 TMEM128Q5BJH2 165 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SLC35E4Q6ICL7 350 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 GLDNQ6ZMI3 551 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 TAC4Q86UU9 113 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 PLPP6Q8IY26 295 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 OR52B6Q8NGF0 335 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 GOT1L1Q8NHS2 421 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 BANF2Q9H503 90 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 MRPS16Q9Y3D3 137 aaKnown RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 G3V2L1 256 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 H7C1C5 153 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ZNF737O75373 536 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 EN2P19622 333 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 LILRA4P59901 499 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 ECM1Q16610 540 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 FAM71E1Q6IPT2 247 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 NIT1Q86X76 327 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 OR8B3Q8NGG8 313 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 SH3RF2Q8TEC5 729 aa5.66□□□□□ -1.5
VCAN-203ENST00000343200 CITED2Q99967 270 aaPredicted RBP5.66□□□□□ -1.5
VCAN-203ENST00000343200 TRAV27A0A087WT01 109 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 HMX2A2RU54 273 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 CORTO00230 105 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 HSD17B6O14756 317 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 POP7O75817 140 aaKnown RBP5.65□□□□□ -1.5
VCAN-203ENST00000343200 OR7C1O76099 320 aaPredicted RBP5.65□□□□□ -1.5
VCAN-203ENST00000343200 HPP00738 406 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 CA3P07451 260 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 PMCHL1Q16048 86 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 CTF1Q16619 201 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 OR4C11Q6IEV9 310 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 ASPGQ86U10 573 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 YRDCQ86U90 279 aaKnown RBP5.65□□□□□ -1.5
VCAN-203ENST00000343200 TMEM102Q8N9M5 508 aaPredicted RBP5.65□□□□□ -1.5
VCAN-203ENST00000343200 FBXO22Q8NEZ5 403 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 OR8G5Q8NG78 346 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 OPALINQ96PE5 141 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 ASIC5Q9NY37 505 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 NAT8Q9UHE5 227 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 TRAPPC2LQ9UL33 140 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 ZNF443Q9Y2A4 671 aaPredicted RBP5.65□□□□□ -1.5
VCAN-203ENST00000343200 TMED3Q9Y3Q3 217 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 FBXO45P0C2W1 286 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 SP2Q02086 613 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 HYAL2Q12891 473 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 OR7A5Q15622 319 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 SLC35G1Q2M3R5 365 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 SSX8Q7RTT4 187 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 TGIF2LXQ8IUE1 241 aa5.65□□□□□ -1.5
VCAN-203ENST00000343200 NDRG1Q92597 394 aaKnown RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms