RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ERVS71-1P61550 626 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 SNAI3Q3KNW1 292 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 VHLLQ6RSH7 139 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 EGFL6Q8IUX8 553 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 SYS1Q8N2H4 156 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 OR1J1Q8NGS3 322 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 CDCA4Q9BXL8 241 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 FAM206AQ9NX38 181 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 CISD1Q9NZ45 108 aaKnown RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 CAB39Q9Y376 341 aaPredicted RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 ABCA4P78363 2273 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 HRNRQ86YZ3 2850 aaPredicted RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 SRSF10O75494 262 aaKnown RBP19.09■□□□□ 0.65
SDC3-202ENST00000339394 PNPP00491 289 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 LCKP06239 509 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 THBS4P35443 961 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 ZNF829Q3KNS6 432 aaPredicted RBP19.09■□□□□ 0.65
SDC3-202ENST00000339394 OR2G6Q5TZ20 316 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 RNLSQ5VYX0 342 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 PRSS48Q7RTY5 328 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 KLHL36Q8N4N3 616 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 TMEM171Q8WVE6 324 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 RORBQ92753 470 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 PELI1Q96FA3 418 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 CCDC90BQ9GZT6 254 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 R4GMQ9 66 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 HECTD1Q9ULT8 2610 aa19.09■□□□□ 0.65
SDC3-202ENST00000339394 C5orf63A6NC05 138 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 J3QW42 95 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 HTR1AP08908 422 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 GABARAPL2P60520 117 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 PPP1CBP62140 327 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 MFGE8Q08431 387 aaPredicted RBP19.08■□□□□ 0.65
SDC3-202ENST00000339394 SPATA46Q5T0L3 261 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 TMPRSS11AQ6ZMR5 421 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 FAM57BQ71RH2 274 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 TMEM200AQ86VY9 491 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 C1orf174Q8IYL3 243 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 RNF166Q96A37 237 aaPredicted RBP19.08■□□□□ 0.65
SDC3-202ENST00000339394 OR2J1Q9GZK6 312 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 ZNF319Q9P2F9 582 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 ERGIC3Q9Y282 383 aa19.08■□□□□ 0.65
SDC3-202ENST00000339394 CENPEQ02224 2701 aa19.08■□□□□ 0.64
SDC3-202ENST00000339394 TMEM129A0AVI4 362 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 MT-ND2P03891 347 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 PSMB10P40306 273 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 CHN2P52757 468 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 NANOGP1Q8N7R0 232 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 OR52H1Q8NGJ2 320 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 OR5L1Q8NGL2 311 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 SPRYD4Q8WW59 207 aaPredicted RBP19.07■□□□□ 0.64
SDC3-202ENST00000339394 COG8Q96MW5 612 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 POFUT1Q9H488 388 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 ZNF442Q9H7R0 627 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 SP140LQ9H930 580 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 FBN2P35556 2912 aa19.07■□□□□ 0.64
SDC3-202ENST00000339394 MT-ND5P03915 603 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 SSTR2P30874 369 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 RPS23P62266 143 aaKnown RBP19.06■□□□□ 0.64
SDC3-202ENST00000339394 MSMPQ1L6U9 139 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 RGS7BPQ6MZT1 257 aaPredicted RBP19.06■□□□□ 0.64
SDC3-202ENST00000339394 ZNF485Q8NCK3 441 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 OR52N1Q8NH53 320 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 SLC25A40Q8TBP6 338 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 GATAD2BQ8WXI9 593 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 PPP1R14AQ96A00 147 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 MARS2Q96GW9 593 aaKnown RBP19.06■□□□□ 0.64
SDC3-202ENST00000339394 PGAM5Q96HS1 289 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 PLEKHF2Q9H8W4 249 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 SNX5Q9Y5X3 404 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 ROS1P08922 2347 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 LRBAP50851 2863 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 ACOD1A6NK06 481 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 LOC110117498-PIK3R3F6TDL0 507 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 MYL12BO14950 172 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 TBX1O43435 398 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 IRF3Q14653 427 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 FBXW5Q969U6 566 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 DHRS9Q9BPW9 319 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 PBOV1Q9GZY1 135 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 G6PC2Q9NQR9 355 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 BABAM2Q9NXR7 383 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 NUFIP1Q9UHK0 495 aaKnown RBP19.06■□□□□ 0.64
SDC3-202ENST00000339394 OR52A1Q9UKL2 312 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 FZR1Q9UM11 496 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 GTF2A1LQ9UNN4 478 aa19.06■□□□□ 0.64
SDC3-202ENST00000339394 E9PI62 339 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 HS3ST1O14792 307 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 OR4A8P0C604 315 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 PRF1P14222 555 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 TUBG1P23258 451 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 APOBEC3AP31941 199 aaPredicted RBP19.05■□□□□ 0.64
SDC3-202ENST00000339394 FABP6P51161 128 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 MALLQ13021 153 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 ADIPOQQ15848 244 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 KCTD21Q4G0X4 260 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 OR8B12Q8NGG6 310 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 OR2AE1Q8NHA4 323 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 KLF14Q8TD94 323 aaPredicted RBP19.05■□□□□ 0.64
SDC3-202ENST00000339394 MND1Q9BWT6 205 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms