RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SIRT4Q9Y6E7 314 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 COL6A6A6NMZ7 2263 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 TRGV8A0A0C4DH27 118 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 TOXO94900 526 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 WNT11O96014 354 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 PATE4P0C8F1 98 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 TAS2R43P59537 309 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 PCK2Q16822 640 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 FAM27BQ5VT28 67 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 GDPGP1Q6ZNW5 385 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 MALT1Q9UDY8 824 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 A0A0G2JMP0 313 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 AP2S1P53680 142 aaPredicted RBP8.8□□□□□ -1
HMGB3-201ENST00000325307 ACSM1Q08AH1 577 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 ENDOGQ14249 297 aaKnown RBP8.8□□□□□ -1
HMGB3-201ENST00000325307 PCSK4Q6UW60 755 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 FOXL2NBQ6ZUU3 175 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 GJC3Q8NFK1 279 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 ST7LQ8TDW4 575 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 TMED9Q9BVK6 235 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 RNF121Q9H920 327 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 BRD7Q9NPI1 651 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 PLEK2Q9NYT0 353 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 PLEKHB1Q9UF11 243 aaPredicted RBP8.8□□□□□ -1
HMGB3-201ENST00000325307 DOCK7Q96N67 2140 aa8.8□□□□□ -1
HMGB3-201ENST00000325307 A0A075B6Q4 140 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TRBV2A0A0J9YWF9 115 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 CIB4A0PJX0 185 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 GLI4P10075 376 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 HSD11B1P28845 292 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 MPGP29372 298 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 GABRA5P31644 462 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TIMP3P35625 211 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 EIF2S3LQ2VIR3 472 aaKnown RBP8.79□□□□□ -1
HMGB3-201ENST00000325307 PXDC1Q5TGL8 231 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 NAXEQ8NCW5 288 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 LHFPL5Q8TAF8 219 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TRIM63Q969Q1 353 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 SLC25A46Q96AG3 418 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 OPN3Q9H1Y3 402 aaPredicted RBP8.79□□□□□ -1
HMGB3-201ENST00000325307 SMURF1Q9HCE7 757 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 SLC5A6Q9Y289 635 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 LRP12Q9Y561 859 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 V9GYH0 126 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 BSNQ9UPA5 3926 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 NBEAQ8NFP9 2946 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 RPL36A-HNRNPH2H7BZ11 118 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TGFBR3Q03167 851 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 GUSBP1Q15486 140 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 GDPD3Q7L5L3 318 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 LAX1Q8IWV1 398 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 SKA3Q8IX90 412 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 FBXO17Q96EF6 278 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZFP3Q96NJ6 502 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 SNTG1Q9NSN8 517 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZNF221Q9UK13 617 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 AUP1Q9Y679 476 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 NBASA2RRP1 2371 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 SMIM30A4D0T7 59 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZNF878C9JN71 531 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TNFSF13O75888 250 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 LYZL6O75951 148 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 CRHP06850 196 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 CST2P09228 141 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 CD79AP11912 226 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 PCBD1P61457 104 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 BDH1Q02338 343 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ROM1Q03395 351 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 MXD1Q05195 221 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ODF4Q2M2E3 257 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZMAT1Q5H9K5 638 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZNF684Q5T5D7 378 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZNF544Q6NX49 715 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 RNF133Q8WVZ7 376 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 HSD17B8Q92506 261 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 TRAF4Q9BUZ4 470 aaPredicted RBP8.79□□□□□ -1
HMGB3-201ENST00000325307 MIXL1Q9H2W2 232 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 FBXL3Q9UKT7 428 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 ZNF835Q9Y2P0 537 aa8.79□□□□□ -1
HMGB3-201ENST00000325307 EEF1E1-BLOC1S5C9J1V9 151 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 EEF1E1O43324 174 aaKnown RBP8.78□□□□□ -1
HMGB3-201ENST00000325307 RAD51DO75771 328 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 CDRT1O95170 752 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ZNF32P17041 273 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 BMP5P22003 454 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 PRKXP51817 358 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SCRN3Q0VDG4 424 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 GPR50Q13585 617 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ZNF79Q15937 498 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 RPL22L1Q6P5R6 122 aaKnown RBP8.78□□□□□ -1
HMGB3-201ENST00000325307 Q6ZT83 130 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ZNF610Q8N9Z0 462 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ST6GALNAC3Q8NDV1 305 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 MARC2Q969Z3 335 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 STARD4Q96DR4 205 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 DIABLOQ9NR28 239 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SSR3Q9UNL2 185 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 TBX1O43435 398 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SGCEO43556 437 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ABHD16AO95870 558 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms