RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MAGEA2P43356 314 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 HMGA2P52926 109 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 TPTEP56180 551 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 ARMCX4Q5H9R4 360 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 LYPD4Q6UWN0 246 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 RASSF6Q6ZTQ3 369 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 MRPL21Q7Z2W9 205 aaKnown RBP16.4■□□□□ 0.22
LIME1-201ENST00000309546 SLC37A3Q8NCC5 494 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 OR2T4Q8NH00 348 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 SPTSSAQ969W0 71 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 NSL1Q96IY1 281 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 JMJD8Q96S16 334 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 TRIM15Q9C019 465 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 OR5V1Q9UGF6 321 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 KCNG2Q9UJ96 466 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 U3KQV3 271 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 PPIAL4EA0A075B759 164 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 PPIAL4CA0A0B4J2A2 164 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 F5H0A9 414 aaPredicted RBP16.39■□□□□ 0.21
LIME1-201ENST00000309546 PPIAL4DF5H284 164 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 TRAPPC2LH3BP13 241 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 M0R135 149 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 PPIAL4FP0DN26 164 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 ZNF154Q13106 437 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 ZNF770Q6IQ21 691 aaPredicted RBP16.39■□□□□ 0.21
LIME1-201ENST00000309546 USP43Q70EL4 1123 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 PGAP1Q75T13 922 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 DHFR2Q86XF0 187 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 DEFB108BQ8NET1 73 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 OR10S1Q8NGN2 331 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 SPRYD4Q8WW59 207 aaPredicted RBP16.39■□□□□ 0.21
LIME1-201ENST00000309546 ZNRF4Q8WWF5 429 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 ZNF799Q96GE5 643 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 CCT8L2Q96SF2 557 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 TSSK6Q9BXA6 273 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 MAGIXQ9H6Y5 334 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 REEP1Q9H902 201 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 VNN3Q9NY84 501 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 IL20Q9NYY1 176 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 SAMHD1Q9Y3Z3 626 aaKnown RBP16.39■□□□□ 0.21
LIME1-201ENST00000309546 AUP1Q9Y679 476 aa16.39■□□□□ 0.21
LIME1-201ENST00000309546 LRRC30A6NM36 301 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 FSHBP01225 129 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 SPARCP09486 303 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 PSKH1P11801 424 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 ZNF12P17014 697 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 CRMP1Q14194 572 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 FAM201AQ5SY85 155 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 LCN8Q6JVE9 175 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 POP5Q969H6 163 aaKnown RBP16.38■□□□□ 0.21
LIME1-201ENST00000309546 DDOQ99489 341 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 MRI1Q9BV20 369 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 SSBP3Q9BWW4 388 aaPredicted RBP16.38■□□□□ 0.21
LIME1-201ENST00000309546 MUC13Q9H3R2 512 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 ARMC1Q9NVT9 282 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 COMMD3-BMI1R4GMX3 469 aa16.38■□□□□ 0.21
LIME1-201ENST00000309546 A8MXK9 166 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 GYPBP06028 91 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 IRF2P14316 349 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 FPR2P25090 351 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 SNAI3Q3KNW1 292 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 FAM98BQ52LJ0 330 aaKnown RBP16.37■□□□□ 0.21
LIME1-201ENST00000309546 OR2T5Q6IEZ7 315 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 DCXRQ7Z4W1 244 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 C1orf87Q8N0U7 546 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 ARHGAP24Q8N264 748 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 LNX2Q8N448 690 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 OR2T29Q8NH02 315 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 OR4Q3Q8NH05 313 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 CCDC124Q96CT7 223 aaKnown RBP16.37■□□□□ 0.21
LIME1-201ENST00000309546 COPS4Q9BT78 406 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 RBM4Q9BWF3 364 aaKnown RBP16.37■□□□□ 0.21
LIME1-201ENST00000309546 TMEM165Q9HC07 324 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 LRCH1Q9Y2L9 728 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 POLR3KQ9Y2Y1 108 aaPredicted RBP16.37■□□□□ 0.21
LIME1-201ENST00000309546 INSIG2Q9Y5U4 225 aa16.37■□□□□ 0.21
LIME1-201ENST00000309546 DOCK11Q5JSL3 2073 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 CALB2P22676 271 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 ENTPD1P49961 510 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 RAD23AP54725 363 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 GNB2P62879 340 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 MS4A2Q01362 244 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 MAB21L1Q13394 359 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 TRIM25Q14258 630 aaKnown RBP16.36■□□□□ 0.21
LIME1-201ENST00000309546 TAF13Q15543 124 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 OR8G1Q15617 311 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 ZNF362Q5T0B9 420 aaPredicted RBP16.36■□□□□ 0.21
LIME1-201ENST00000309546 PRAMEF6Q5VXH4 476 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 KLBQ86Z14 1044 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 ZNF511Q8NB15 262 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 CCDC197Q8NCU1 140 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 OR2T33Q8NG76 320 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 OR6K6Q8NGW6 343 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 OR2AE1Q8NHA4 323 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 FAM216AQ8WUB2 273 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 GCDHQ92947 438 aaPredicted RBP16.36■□□□□ 0.21
LIME1-201ENST00000309546 LRGUKQ96M69 825 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 CENPMQ9NSP4 180 aa16.36■□□□□ 0.21
LIME1-201ENST00000309546 DDX28Q9NUL7 540 aaKnown RBP16.36■□□□□ 0.21
LIME1-201ENST00000309546 UFSP2Q9NUQ7 469 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms