RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GPR119Q8TDV5 335 aa15.75■□□□□ 0.11
SYNPO-201ENST00000307662 LAT2Q9GZY6 243 aa15.75■□□□□ 0.11
SYNPO-201ENST00000307662 GPR84Q9NQS5 396 aa15.75■□□□□ 0.11
SYNPO-201ENST00000307662 A0A1W2PPQ1 181 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ZNF732B4DXR9 585 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 K7EQM0 130 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 UPK1AO00322 258 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 HS3ST1O14792 307 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ACOT6Q3I5F7 207 aaPredicted RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 SPACA5Q96QH8 159 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 CALHM2Q9HA72 323 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 LAMP3Q9UQV4 416 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 TLCD2A6NGC4 264 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 GABRA4P48169 554 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 PIGPP57054 158 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 GSG1Q2KHT4 349 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ANKRD16Q6P6B7 361 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 SSX7Q7RTT5 188 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ST6GAL2Q96JF0 529 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 THAP10Q9P2Z0 257 aaPredicted RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 A4GNTQ9UNA3 340 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 FOXJ3Q9UPW0 622 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 DDX60LQ5H9U9 1706 aaKnown RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 RAB27BO00194 218 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 YKT6O15498 198 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 HMGA1P17096 107 aaKnown RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 CTRB1P17538 263 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 RPS27P42677 84 aaKnown RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 COL13A1Q5TAT6 717 aaPredicted RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 CTRB2Q6GPI1 263 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 OR52N5Q8NH56 324 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ZFPM2Q8WW38 1151 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 SLCO1C1Q9NYB5 712 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 PXNP49023 591 aaPredicted RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 FABP9Q0Z7S8 132 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ZNF528Q3MIS6 628 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 THEM4Q5T1C6 240 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 LHFPL2Q6ZUX7 228 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 AKR7LQ8NHP1 331 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 NAT6Q93015 286 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 SOX7Q9BT81 388 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 ZNF230Q9UIE0 474 aaPredicted RBP15.74■□□□□ 0.11
SYNPO-201ENST00000307662 FBXO4Q9UKT5 387 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 TAF1P21675 1872 aa15.74■□□□□ 0.11
SYNPO-201ENST00000307662 GPR31O00270 319 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 SLC17A2O00624 439 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 RGS13O14921 159 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 ENSAO43768 121 aaKnown RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 FKBP2P26885 142 aaKnown RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 DHODHQ02127 395 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 PJVKQ0ZLH3 352 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 ELAVL1Q15717 326 aaKnown RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 GUK1Q16774 197 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 KLHDC1Q8N7A1 406 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 OR10P1Q8NGE3 313 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 PBOV1Q9GZY1 135 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 G3V3Y1 287 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 H3BNC9 293 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 DVL1O14640 695 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 GUSBP08236 651 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 SPP1P10451 314 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 ATF1P18846 271 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 OPRM1P35372 400 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 DVL1P1P54792 670 aaPredicted RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 MLF1P58340 268 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 KIAA1958Q8N8K9 716 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 OR5B3Q8NH48 314 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 CBY3A6NI87 242 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 FABP4P15090 132 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 CD22P20273 847 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 AVPR2P30518 371 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 DPTQ07507 201 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 RLN3Q8WXF3 142 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 OR5K3A6NET4 321 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 H3BQ06 376 aaPredicted RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 EFSO43281 561 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 XRCC2O43543 280 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 SIGLEC6O43699 453 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 IGLV3-27P01718 113 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 LAMB1P07942 1786 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 QDPRP09417 244 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 COX5AP20674 150 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 G0S2P27469 103 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 TIGITQ495A1 244 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 PRAMEF5Q5TYX0 476 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 PRAMEF6Q5VXH4 476 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 SLC24A4Q8NFF2 622 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 HGDQ93099 445 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 ARHGDIGQ99819 225 aa15.73■□□□□ 0.11
SYNPO-201ENST00000307662 RCL1Q9Y2P8 373 aaKnown RBP15.73■□□□□ 0.11
SYNPO-201ENST00000307662 ZNF320A2RRD8 509 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 HNF1AP20823 631 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 PGFP49763 221 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 MEOX2P50222 304 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 CDK5Q00535 292 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 PNLIPRP3Q17RR3 467 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 RTN4IP1Q8WWV3 396 aaPredicted RBP15.72■□□□□ 0.11
SYNPO-201ENST00000307662 PLEKHB1Q9UF11 243 aaPredicted RBP15.72■□□□□ 0.11
SYNPO-201ENST00000307662 AQP7O14520 342 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ABOP16442 354 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms