RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 OR2G2Q8NGZ5 317 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 TCFL5Q9UL49 500 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 SIPA1L3O60292 1781 aaPredicted RBP16.72■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF816-ZNF321PA0A0X1KG74 233 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 PEA15Q15121 130 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 TCTN1Q2MV58 587 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 H2BFWTQ7Z2G1 175 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 LACC1Q8IV20 430 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 HAS2Q92819 552 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 C3orf49Q96BT1 292 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 KCNIP2Q9NS61 270 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF121P58317 390 aaPredicted RBP16.71■□□□□ 0.27
PCDH1-201ENST00000287008 RELAQ04206 551 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 PAQR8Q8TEZ7 354 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 CT55Q8WUE5 264 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 TCRBV5S2A0A599 114 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 HSD17B6O14756 317 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 SRD5A2P31213 254 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 BAXQ07812 192 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 PRICKLE4Q2TBC4 344 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 PRELID1Q9Y255 219 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 TRIP12Q14669 1992 aaPredicted RBP16.71■□□□□ 0.27
PCDH1-201ENST00000287008 A0A0B4J2E0 115 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 A0A1B0GX12 115 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 RAC1P63000 192 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 HTD2P86397 168 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.71■□□□□ 0.27
PCDH1-201ENST00000287008 SMIM21Q3B7S5 101 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 FAHD1Q6P587 224 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 COMMD7Q86VX2 200 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 SUMF1Q8NBK3 374 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 OR2AE1Q8NHA4 323 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 FCRL1Q96LA6 429 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 MBOAT4Q96T53 435 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 ARHGDIGQ99819 225 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 PLK3Q9H4B4 646 aa16.71■□□□□ 0.27
PCDH1-201ENST00000287008 PRICKLE3O43900 615 aaPredicted RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 PMS2P2O95744 297 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 HOXB3P14651 431 aaPredicted RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 SUB1P53999 127 aaKnown RBP eCLIP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 MRPS34P82930 218 aaKnown RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 TMEM211Q6ICI0 200 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 OR6K3Q8NGY3 331 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 FAM212BQ9NTI7 297 aaPredicted RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 OCIAD1Q9NX40 245 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 ARAP2Q8WZ64 1704 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 ALOX5APP20292 161 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 FBXL14Q8N1E6 418 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 SUMF2Q8NBJ7 301 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 ISYNA1Q9NPH2 558 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 GPATCH2Q9NW75 528 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 KIAA1456Q9P272 454 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 TMEM235A6NFC5 223 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 THBS3P49746 956 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 RAE1P78406 368 aaKnown RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 C16orf47Q6ZP98 133 aaPredicted RBP16.7■□□□□ 0.26
PCDH1-201ENST00000287008 RIMKLAQ8IXN7 391 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 UHRF2Q96PU4 802 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 CPEP16870 476 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 FZD5Q13467 585 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 DYRK1AQ13627 763 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 TMPRSS11FQ6ZWK6 438 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 SLA2Q9H6Q3 261 aa16.7■□□□□ 0.26
PCDH1-201ENST00000287008 C21orf140B9A014 251 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 OPRM1P35372 400 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 GPR12P47775 334 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SPATA46Q5T0L3 261 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 PRSS45Q7RTY3 260 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 PLPP5Q8NEB5 264 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 OR1F12Q8NHA8 337 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 NUBPLQ8TB37 319 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 LRRC3BQ96PB8 259 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 HRH4Q9H3N8 390 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SLCO1C1Q9NYB5 712 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 A0A1W2PQF6 199 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SSTR2P30874 369 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 CDAP32320 146 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SERPINF1P36955 418 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 PCBP4P57723 403 aaKnown RBP16.69■□□□□ 0.26
PCDH1-201ENST00000287008 ZXDAP98168 799 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 NCCRP1Q6ZVX7 275 aaPredicted RBP16.69■□□□□ 0.26
PCDH1-201ENST00000287008 TMEM200AQ86VY9 491 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 OR51S1Q8NGJ8 323 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SLC25A46Q96AG3 418 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 ZNF486Q96H40 463 aaPredicted RBP16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SLC39A9Q9NUM3 307 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 SLC23A1Q9UHI7 598 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 RTTNQ86VV8 2226 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 FAM90A27PA6NNH2 459 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 AIPO00170 330 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 FABP1P07148 127 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 CLINT1Q14677 625 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 EBPQ15125 230 aaKnown RBP16.69■□□□□ 0.26
PCDH1-201ENST00000287008 CTU2Q2VPK5 515 aaKnown RBP16.69■□□□□ 0.26
PCDH1-201ENST00000287008 D2HGDHQ8N465 521 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 NANPQ8TBE9 248 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 RAB27BO00194 218 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 ZNF266Q14584 549 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 PP6455Q8WZ26 134 aa16.69■□□□□ 0.26
PCDH1-201ENST00000287008 A4GNTQ9UNA3 340 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms