RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CCR6P51684 374 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 PSMA6P60900 246 aaKnown RBP13.52□□□□□ -0.24
SF3B4-201ENST00000271628 GRB2P62993 217 aaKnown RBP13.52□□□□□ -0.24
SF3B4-201ENST00000271628 GLT8D1Q68CQ7 371 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 ABLIM2Q6H8Q1 611 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 PRSS45Q7RTY3 260 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 C15orf40Q8WUR7 153 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 C17orf50Q8WW18 174 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 RBM24Q9BX46 236 aaKnown RBP13.52□□□□□ -0.24
SF3B4-201ENST00000271628 PBOV1Q9GZY1 135 aa13.52□□□□□ -0.24
SF3B4-201ENST00000271628 CDV3Q9UKY7 258 aaKnown RBP13.52□□□□□ -0.24
SF3B4-201ENST00000271628 ARGFXA6NJG6 315 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 NME2P1O60361 137 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 CYTIPO60759 359 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 PRAF2O60831 178 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 TPPPO94811 219 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 IGFBP3P17936 291 aaPredicted RBP13.52□□□□□ -0.25
SF3B4-201ENST00000271628 NME2P22392 152 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 OR3A3P47888 321 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 ART1P52961 327 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 PER3P56645 1201 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 CLDN15P56746 228 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 MRPS10P82664 201 aaKnown RBP13.52□□□□□ -0.25
SF3B4-201ENST00000271628 PLGLB1Q02325 96 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 IKZF1Q13422 519 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 HYAL4Q2M3T9 481 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 PHYHD1Q5SRE7 291 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 MDS2Q8NDY4 140 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 DNAAF1Q8NEP3 725 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 OR8H1Q8NGG4 311 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 GIMAP1Q8WWP7 306 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 RADILQ96JH8 1075 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 ZNF416Q9BWM5 594 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 HES7Q9BYE0 225 aa13.52□□□□□ -0.25
SF3B4-201ENST00000271628 ELF5Q9UKW6 265 aaPredicted RBP13.52□□□□□ -0.25
SF3B4-201ENST00000271628 RER1O15258 196 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 PEX14O75381 377 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 TTRP02766 147 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CEACAM1P13688 526 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CXCL3P19876 107 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CLDN12P56749 244 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CAMK2BQ13554 666 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 ST3GAL2Q16842 350 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 RNASE12Q5GAN4 147 aaKnown RBP13.51□□□□□ -0.25
SF3B4-201ENST00000271628 TEX261Q6UWH6 196 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 GALNTL5Q7Z4T8 443 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 SYNPRQ8TBG9 265 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 ROBO4Q8WZ75 1007 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 HAS2Q92819 552 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 FAM86C1Q9NVL1 165 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 U3KQ87 197 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 P2RY10O00398 339 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 MT-ND4P03905 459 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 TPOP07202 933 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 ACSM4P0C7M7 580 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CTSSP25774 331 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 P2RX3P56373 397 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 MRPS34P82930 218 aaKnown RBP13.51□□□□□ -0.25
SF3B4-201ENST00000271628 ELFN2Q5R3F8 820 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 LINGO2Q7L985 606 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 AAED1Q7RTV5 226 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 SERPINA12Q8IW75 414 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 HAVCR1Q96D42 359 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 CITED4Q96RK1 184 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 C20orf85Q9H1P6 137 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 PNRC2Q9NPJ4 139 aaKnown RBP13.51□□□□□ -0.25
SF3B4-201ENST00000271628 SCP2D1Q9UJQ7 156 aa13.51□□□□□ -0.25
SF3B4-201ENST00000271628 PHF3Q92576 2039 aaKnown RBP13.5□□□□□ -0.25
SF3B4-201ENST00000271628 SLC17A2O00624 439 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 SYT7O43581 403 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 GLSO94925 669 aaPredicted RBP13.5□□□□□ -0.25
SF3B4-201ENST00000271628 TGM6O95932 706 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 CD37P11049 281 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 PSMB1P20618 241 aaKnown RBP13.5□□□□□ -0.25
SF3B4-201ENST00000271628 MAGEA5P43359 124 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 LHX2P50458 406 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 ESCO2Q56NI9 601 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 RIPPLY2Q5TAB7 128 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 ATP1A1-AS1Q5TC04 95 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 FAM27BQ5VT28 67 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 FAM109AQ8N4B1 249 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 MEIOBQ8N635 442 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 TMEM251Q8N6I4 163 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 FCAMRQ8WWV6 532 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 NABP1Q96AH0 204 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 FOXRED1Q96CU9 486 aaPredicted RBP13.5□□□□□ -0.25
SF3B4-201ENST00000271628 SLC25A38Q96DW6 304 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 AUNIPQ9H7T9 357 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 NPTNQ9Y639 398 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 CNTRLQ7Z7A1 2325 aa13.5□□□□□ -0.25
SF3B4-201ENST00000271628 EP300Q09472 2414 aaPredicted RBP13.49□□□□□ -0.25
SF3B4-201ENST00000271628 SSNA1O43805 119 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 TSC22D2O75157 780 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 KRT33AO76009 404 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 APOC1P02654 83 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 RFC3P40938 356 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 MEOX1P50221 254 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 PRKXP51817 358 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 ASPHD2Q6ICH7 369 aa13.49□□□□□ -0.25
SF3B4-201ENST00000271628 GPR137CQ8N3F9 429 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms