RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SMKR1H3BMG3 65 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 H7C1H1 209 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OVOL1O14753 267 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TAAR5O14804 337 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 POLR1CO15160 346 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 MAGEB3O15480 346 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NUPL2O15504 423 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZNF208O43345 1280 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 RAD51CO43502 376 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CHST10O43529 356 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NMT2O60551 498 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 KLHL41O60662 606 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PLIN3O60664 434 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SURF6O75683 361 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 B3GALNT1O75752 331 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SEMA3DO95025 777 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CPSF4O95639 269 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 CLIC3O95833 236 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NDUFB10O96000 172 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CYB5R3P00387 301 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 IL1BP01584 269 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1-39P01597 117 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGHG2P01859 326 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1D-39P04432 117 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SERPINA5P05154 406 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 EIF4EP06730 217 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 SERPINE2P07093 398 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ASGR1P07306 291 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MMP7P09237 267 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 ACSM4P0C7M7 580 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 GPR89BP0CG08 455 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CALM1P0DP23 149 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CALM2P0DP24 149 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CALM3P0DP25 149 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CD28P10747 220 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ERGP11308 486 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SLC2A5P22732 501 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 F2RP25116 425 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 U2AF2P26368 475 aaKnown RBP eCLIP0.07□□□□□ -2.4
VPS35-212ENST00000640313 CHMLP26374 656 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PSMA5P28066 241 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PSMB5P28074 263 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MPV17P39210 176 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CEACAM3P40198 252 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TNFSF9P41273 254 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 HCAR3P49019 387 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CSNK1EP49674 416 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 GZMMP51124 257 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 P2RX1P51575 399 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CCNG1P51959 295 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NDUFA8P51970 172 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CDKN2DP55273 166 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CDH6P55285 790 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 UBE2NP61088 152 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 POLR2FP61218 127 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 YWHAGP61981 247 aaKnown RBP eCLIP0.07□□□□□ -2.4
VPS35-212ENST00000640313 RPS23P62266 143 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 DEFB103AP81534 67 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MRPS22P82650 360 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 SEMG2Q02383 582 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SP4Q02446 784 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PPIDQ08752 370 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 FGL1Q08830 312 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PNOCQ13519 176 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PRPSAP1Q14558 356 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TPD52L1Q16890 204 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 HSP90AA5PQ58FG0 334 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TMEM69Q5SWH9 247 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZNF678Q5SXM1 525 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 C1orf185Q5T7R7 199 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ATAD3BQ5T9A4 648 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 KDM4DQ6B0I6 523 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 AMMECR1LQ6DCA0 310 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PRSS54Q6PEW0 395 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MORN3Q6PF18 240 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 MBOAT2Q6ZWT7 520 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TCF24Q7RTU0 167 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SNX20Q7Z614 316 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 DAZ4Q86SG3 579 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 NKAIN4Q8IVV8 208 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IQCKQ8N0W5 287 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TMEM256Q8N2U0 113 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZCCHC7Q8N3Z6 543 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 LIX1Q8N485 282 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 METTL13Q8N6R0 699 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SLC25A29Q8N8R3 303 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PRELID2Q8N945 189 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZFP62Q8NB50 900 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 BHLHE23Q8NDY6 225 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 C19orf18Q8NEA5 215 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZNF680Q8NEM1 530 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR2Z1Q8NG97 314 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR10W1Q8NGF6 305 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR52E2Q8NGJ4 325 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR4C13Q8NGP0 309 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR9A2Q8NGT5 310 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR52N1Q8NH53 320 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MUC7Q8TAX7 377 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NUBPLQ8TB37 319 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ZNF502Q8TBZ5 544 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms