RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ZNF570Q96NI8 536 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 OR8B2Q96RD0 313 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 HDHD2Q9H0R4 259 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 SYT4Q9H2B2 425 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 BEX1Q9HBH7 125 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 SAR1AQ9NR31 198 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 LHFPL6Q9Y693 200 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 POMT1Q9Y6A1 747 aa13.67□□□□□ -0.22
CLN3-255ENST00000637100 LRRC30A6NM36 301 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 HMGB1P1B2RPK0 211 aaPredicted RBP13.66□□□□□ -0.22
CLN3-255ENST00000637100 C22orf46C9J442 243 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 F5H5P2 479 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 SLC16A7O60669 478 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 ZNF205O95201 554 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 OMGP23515 440 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 RPL4P36578 427 aaKnown RBP13.66□□□□□ -0.22
CLN3-255ENST00000637100 CD200P41217 278 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 YAP1P46937 504 aaKnown RBP13.66□□□□□ -0.22
CLN3-255ENST00000637100 COX10Q12887 443 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 KRR1Q13601 381 aaKnown RBP13.66□□□□□ -0.22
CLN3-255ENST00000637100 CLEC12AQ5QGZ9 265 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 FAM201AQ5SY85 155 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 OLFML2AQ68BL7 652 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 PGM2L1Q6PCE3 622 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 LYPD2Q6UXB3 125 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 ZNF730Q6ZMV8 503 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 PTCHD4Q6ZW05 846 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 CBLL1Q75N03 491 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 NLRC3Q7RTR2 1065 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 MOGAT3Q86VF5 341 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 GJC3Q8NFK1 279 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 SLC7A13Q8TCU3 470 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 FAM71F1Q96KD3 344 aaPredicted RBP13.66□□□□□ -0.22
CLN3-255ENST00000637100 CDADC1Q9BWV3 514 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 NUAK2Q9H093 628 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 GID8Q9NWU2 228 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 CMTM6Q9NX76 183 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 PTTG3PQ9NZH4 202 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 ARMCX1Q9P291 453 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 CLN8Q9UBY8 286 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 TMEM5Q9Y2B1 443 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 AP3M1Q9Y2T2 418 aa13.66□□□□□ -0.22
CLN3-255ENST00000637100 IMPA2O14732 288 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 NDUFB2O95178 105 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 PPP1R3DO95685 299 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 KNG1P01042 644 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 LIPFP07098 398 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 SELEP16581 610 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 GPR4P46093 362 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 NPY4RP50391 375 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 RAG2P55895 527 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 KRTAP10-3P60369 221 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 FGF12P61328 243 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 SRSF4Q08170 494 aaKnown RBP13.65□□□□□ -0.22
CLN3-255ENST00000637100 MAPRE2Q15555 327 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 C11orf91Q3C1V1 193 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 C1orf94Q6P1W5 598 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 BRD3OSQ6XYD6 125 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 SLC15A3Q8IY34 581 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 KIR3DL3Q8N743 410 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 TMEM120AQ9BXJ8 343 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 CHIAQ9BZP6 476 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 TMEM100Q9NV29 134 aa13.65□□□□□ -0.22
CLN3-255ENST00000637100 IGLV1-36A0A0B4J1U3 117 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 A0A1W2PRQ8 180 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 CLPSL1A2RUU4 121 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 P2RY10O00398 339 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 DCTN6O00399 190 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 ENSAO43768 121 aaKnown RBP13.64□□□□□ -0.23
CLN3-255ENST00000637100 MELTFP08582 738 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 FPR3P25089 353 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 CDKN2AP42771 156 aaKnown RBP13.64□□□□□ -0.23
CLN3-255ENST00000637100 OMPP47874 163 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 DGCR6Q14129 220 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 GK2Q14410 553 aaPredicted RBP13.64□□□□□ -0.23
CLN3-255ENST00000637100 IFI44LQ53G44 452 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 OTPQ5XKR4 325 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 TBX15Q96SF7 602 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 FUZQ9BT04 418 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 MMP27Q9H306 513 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 ENPP4Q9Y6X5 453 aa13.64□□□□□ -0.23
CLN3-255ENST00000637100 CENPVL3A0A0U1RRI6 287 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 ZNF879B4DU55 563 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 SLC22A2O15244 555 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 CLPXO76031 633 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 ACSM4P0C7M7 580 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 CFHR2P36980 270 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 GPR157Q5UAW9 335 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 ASPHD2Q6ICH7 369 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 C8orf82Q6P1X6 216 aaPredicted RBP13.63□□□□□ -0.23
CLN3-255ENST00000637100 FIP1L1Q6UN15 594 aaKnown RBP13.63□□□□□ -0.23
CLN3-255ENST00000637100 DPY19L2P2Q6ZN68 376 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 PLPP7Q8NBV4 271 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 SLC26A10Q8NG04 563 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 NDEL1Q9GZM8 345 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 GMPR2Q9P2T1 348 aaKnown RBP13.63□□□□□ -0.23
CLN3-255ENST00000637100 CTSZQ9UBR2 303 aa13.63□□□□□ -0.23
CLN3-255ENST00000637100 LOC100653049A0A140TA62 436 aa13.62□□□□□ -0.23
CLN3-255ENST00000637100 KRT34O76011 436 aa13.62□□□□□ -0.23
CLN3-255ENST00000637100 HLA-DPB1P04440 258 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms