RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RAD21L1Q9H4I0 556 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 EMC7Q9NPA0 242 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 SLC13A4Q9UKG4 626 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 CSMD3Q7Z407 3707 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 C12orf71A8MTZ7 269 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 HDAC3O15379 428 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 CHST1O43916 411 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 ECDO95905 644 aaPredicted RBP11.84□□□□□ -0.51
CLN3-249ENST00000636685 IL6P05231 212 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 ZNF26P17031 533 aaPredicted RBP11.84□□□□□ -0.51
CLN3-249ENST00000636685 MSR1P21757 451 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 FPR3P25089 353 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 RAD23AP54725 363 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 PRSS12P56730 875 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 SLC35A2P78381 396 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 EGFEM1PQ0D2K5 195 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 POU4F2Q12837 409 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 OR8B8Q15620 311 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 NPTX1Q15818 432 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 C6orf10Q5SRN2 563 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 SYT9Q86SS6 491 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 KRT73Q86Y46 540 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 BEND2Q8NDZ0 799 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 WIPF2Q8TF74 440 aaPredicted RBP11.84□□□□□ -0.51
CLN3-249ENST00000636685 NKX3-1Q99801 234 aaPredicted RBP11.84□□□□□ -0.51
CLN3-249ENST00000636685 ECSITQ9BQ95 431 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 C20orf27Q9GZN8 174 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 NPFFR1Q9GZQ6 430 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 ZNF702PQ9H963 129 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 C20orf141Q9NUB4 165 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 TMEM100Q9NV29 134 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 STX18Q9P2W9 335 aaKnown RBP11.84□□□□□ -0.51
CLN3-249ENST00000636685 RNF7Q9UBF6 113 aa11.84□□□□□ -0.51
CLN3-249ENST00000636685 A0A1B0GW55 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 A0A1B0GWJ7 208 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 GMNCA6NCL1 334 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 IQCF6A8MYZ5 107 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 CLIC1O00299 241 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 SGCEO43556 437 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L2P0CJ85 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L3P0CJ86 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L4P0CJ87 422 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L5P0CJ88 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L6P0CJ89 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L7P0CJ90 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 PAX6P26367 422 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 AQP1P29972 269 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 GUCA1AP43080 201 aaPredicted RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 RPL14P50914 215 aaKnown RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 CDK6Q00534 326 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 FADDQ13158 208 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 TOP3AQ13472 1001 aaPredicted RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 ENTPD8Q5MY95 495 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 REEP3Q6NUK4 255 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4L9Q6RFH8 374 aaPredicted RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 TSPYL5Q86VY4 417 aaPredicted RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 MREGQ8N565 214 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 Q8N7P7 452 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 LY6G5BQ8NDX9 201 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 MUC7Q8TAX7 377 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 SLC7A13Q8TCU3 470 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 ERGIC1Q969X5 290 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 RCC1LQ96I51 464 aaKnown RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 ITCHQ96J02 903 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 RBP7Q96R05 134 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 WDR76Q9H967 626 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 MEPEQ9NQ76 525 aaPredicted RBP11.83□□□□□ -0.52
CLN3-249ENST00000636685 POLE4Q9NR33 117 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 DUX4Q9UBX2 424 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 SLC7A7Q9UM01 511 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 RAP2CQ9Y3L5 183 aa11.83□□□□□ -0.52
CLN3-249ENST00000636685 PRORSD1PA6NEY8 169 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 OOEPA6NGQ2 149 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 NDUFA2O43678 99 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 DBHP09172 617 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 PF4V1P10720 104 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 FUT1P19526 365 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 CD200P41217 278 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 ABCE1P61221 599 aaKnown RBP11.82□□□□□ -0.52
CLN3-249ENST00000636685 SCRN3Q0VDG4 424 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 GCNT6Q5T4J0 391 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 INTS11Q5TA45 600 aaKnown RBP11.82□□□□□ -0.52
CLN3-249ENST00000636685 RBM45Q8IUH3 476 aaKnown RBP11.82□□□□□ -0.52
CLN3-249ENST00000636685 CELF2-AS1Q8N7Q2 184 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 SMYD1Q8NB12 490 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 PCYOX1LQ8NBM8 494 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 OR6T1Q8NGN1 323 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 TNFRSF14Q92956 283 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 RASD2Q96D21 266 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 ALG12Q9BV10 488 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 PAIP1Q9H074 479 aaKnown RBP11.82□□□□□ -0.52
CLN3-249ENST00000636685 RMND5AQ9H871 391 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 RAB18Q9NP72 206 aa11.82□□□□□ -0.52
CLN3-249ENST00000636685 TRAV38-1A0A0B4J264 116 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 SDHDO14521 159 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 OR7A10O76100 309 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 PF4P02776 101 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 NR2C1P13056 603 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 BGNP21810 368 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 ELF3P78545 371 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms