RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CHST4Q8NCG5 386 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 B3GNT7Q8NFL0 401 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 OR1J4Q8NGS1 313 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 OR5B3Q8NH48 314 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 OR10G6Q8NH81 332 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 CMTM2Q8TAZ6 248 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 GPR151Q8TDV0 419 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM230Q96A57 120 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM159Q96B96 161 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 GPR82Q96P67 336 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 OR5B12Q96R08 314 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 ROPN1BQ9BZX4 212 aaPredicted RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM27Q9HBJ8 222 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 FGF20Q9NP95 211 aaPredicted RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KANK1Q14678 1352 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KMT2BQ9UMN6 2715 aaPredicted RBP0.78□□□□□ -2.29
SCN1A-208ENST00000625916 IGKV1-8A0A0C4DH67 115 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 H7C417 338 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 NDC80O14777 642 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 FKBP6O75344 327 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 IL1BP01584 269 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 IGLV7-43P04211 117 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ACSM4P0C7M7 580 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF35P13682 527 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 MX1P20591 662 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 NTF3P20783 257 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 U2AF2P26368 475 aaKnown RBP eCLIP0.77□□□□□ -2.29
SCN1A-208ENST00000625916 TALDO1P37837 337 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 CRYBB2P43320 205 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 UBE2E1P51965 193 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 CDH6P55285 790 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 RPS23P62266 143 aaKnown RBP0.77□□□□□ -2.29
SCN1A-208ENST00000625916 CYP24A1Q07973 514 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 VPS26BQ4G0F5 336 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 PYDC2Q56P42 97 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 SOHLH1Q5JUK2 328 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 CTSL3PQ5NE16 218 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ZFAND6Q6FIF0 208 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ERO1BQ86YB8 467 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 EGFL6Q8IUX8 553 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 NPWQ8N729 165 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 BHLHE23Q8NDY6 225 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 SPATA4Q8NEY3 305 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 OR4M1Q8NGD0 313 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 EEF1AKMT3Q96AZ1 226 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 MARVELD1Q9BSK0 173 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 MED4Q9NPJ6 270 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 IL37Q9NZH6 218 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 UXTQ9UBK9 157 aaPredicted RBP0.77□□□□□ -2.29
SCN1A-208ENST00000625916 MTFP1Q9UDX5 166 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ADGRA3Q8IWK6 1321 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 ZSWIM8A7E2V4 1837 aa0.77□□□□□ -2.29
SCN1A-208ENST00000625916 NACADO15069 1562 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 IGHV1-69DA0A0B4J2H0 117 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 A0A0J9YXV3 536 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 A0A1B0GUH1 482 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 FAM240BA0A1B0GVZ2 78 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 LYRM9A8MSI8 78 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 E7EQL1 145 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 TNFRSF11BO00300 401 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 IGLV2-8P01709 118 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 RPN2P04844 631 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 GLRA2P23416 452 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 TMED10P49755 219 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 ARFIP1P53367 373 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 PLP1P60201 277 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 STXBP1P61764 594 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 PRR3P79522 188 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 SIGLEC14Q08ET2 396 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 BST2Q10589 180 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 NCF4Q15080 339 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF726P1Q15940 193 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 UBE2UQ5VVX9 321 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 TBPL2Q6SJ96 375 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 RUFY3Q7L099 469 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 NIPA1Q7RTP0 329 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 STK40Q8N2I9 435 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 CBR4Q8N4T8 237 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF645Q8N7E2 425 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 PRELID2Q8N945 189 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 OR52M1Q8NGK5 317 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 CPNE4Q96A23 557 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 TBC1D31Q96DN5 1066 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 ZBED3Q96IU2 234 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 PKMYT1Q99640 499 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 SAMD10Q9BYL1 202 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 MYOZ1Q9NP98 299 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 ASF1BQ9NVP2 202 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 SUN2Q9UH99 717 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 LGALS13Q9UHV8 139 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 MCTS1Q9ULC4 181 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 YARS2Q9Y2Z4 477 aaKnown RBP0.76□□□□□ -2.29
SCN1A-208ENST00000625916 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 TICRRQ7Z2Z1 1910 aa0.76□□□□□ -2.29
SCN1A-208ENST00000625916 USP47Q96K76 1375 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SMIM26A0A096LP01 95 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ARHGEF35A5YM69 484 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SYCE1LA8MT33 242 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 PLPP1O14494 284 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 AIM2O14862 343 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms