RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CTSZQ9UBR2 303 aa12.16□□□□□ -0.46
PNKP-218ENST00000625299 POLR1DQ9Y2S0 133 aa12.16□□□□□ -0.46
PNKP-218ENST00000625299 KMT2CQ8NEZ4 4911 aaKnown RBP12.15□□□□□ -0.46
PNKP-218ENST00000625299 C5orf63A6NC05 138 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 OR6C6A6NF89 314 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 IQCF6A8MYZ5 107 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 XKRYO14609 159 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 RER1O15258 196 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 FSTL3O95633 263 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 LIPFP07098 398 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 RPL4P36578 427 aaKnown RBP12.15□□□□□ -0.46
PNKP-218ENST00000625299 CCDC92Q53HC0 331 aaPredicted RBP12.15□□□□□ -0.46
PNKP-218ENST00000625299 CCDC80Q76M96 950 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 OAFQ86UD1 273 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 LDLRAD3Q86YD5 345 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 PNLDC1Q8NA58 520 aaKnown RBP12.15□□□□□ -0.46
PNKP-218ENST00000625299 OR13C2Q8NGS9 318 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 LRTOMTQ8WZ04 291 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 APOBEC3DQ96AK3 386 aaPredicted RBP12.15□□□□□ -0.46
PNKP-218ENST00000625299 C7orf26Q96N11 449 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 PARD6BQ9BYG5 372 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 RASSF4Q9H2L5 321 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 DPAGT1Q9H3H5 408 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 GRHPRQ9UBQ7 328 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 FAM96BQ9Y3D0 163 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 ADAM18Q9Y3Q7 739 aa12.15□□□□□ -0.46
PNKP-218ENST00000625299 ZNF816-ZNF321PA0A0X1KG74 233 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 BTBD17A6NE02 478 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 EFCAB9A8MZ26 197 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 J3QW42 95 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 ADAM20O43506 726 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 CTLA4P16410 223 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 SLC18A1P54219 525 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 ARF6P62330 175 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 MAB21L1Q13394 359 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 OR8B8Q15620 311 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 MESTQ5EB52 335 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 NRMQ8IXM6 262 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 DPP10Q8N608 796 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 MRAPQ8TCY5 172 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 Q96M85 177 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 ZNF570Q96NI8 536 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 ECSITQ9BQ95 431 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 HCAR1Q9BXC0 346 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 SIRPDQ9H106 197 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 SEMA6AQ9H2E6 1030 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 RABEP2Q9H5N1 569 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 C16orf95Q9H693 158 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 SMURF1Q9HCE7 757 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 RHCGQ9UBD6 479 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 PLXNB1O43157 2135 aa12.14□□□□□ -0.47
PNKP-218ENST00000625299 TEX13CA0A0J9YWL9 993 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 SLC16A7O60669 478 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 GATA4P43694 442 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 YAP1P46937 504 aaKnown RBP12.13□□□□□ -0.47
PNKP-218ENST00000625299 SLC9A3P48764 834 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 ST3GAL3Q11203 375 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 MPPED2Q15777 294 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 KCNJ8Q15842 424 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 CLEC12AQ5QGZ9 265 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 BEND6Q5SZJ8 279 aaPredicted RBP12.13□□□□□ -0.47
PNKP-218ENST00000625299 Q8TCH9 128 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 LRRC8CQ8TDW0 803 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 TPD52L3Q96J77 140 aa12.13□□□□□ -0.47
PNKP-218ENST00000625299 COA3Q9Y2R0 106 aaPredicted RBP12.13□□□□□ -0.47
PNKP-218ENST00000625299 PRSS37A4D1T9 235 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 LGALS8O00214 317 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 KHDRBS3O75525 346 aaKnown RBP12.12□□□□□ -0.47
PNKP-218ENST00000625299 FUT4P22083 530 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 IFNA8P32881 189 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 CENPAP49450 140 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 GZMMP51124 257 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 LRRC23Q53EV4 343 aaPredicted RBP12.12□□□□□ -0.47
PNKP-218ENST00000625299 SAMD5Q5TGI4 173 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 Q6ZTK2 550 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 VMO1Q7Z5L0 202 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 GLB1L2Q8IW92 636 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 PIP4P2Q8N4L2 257 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 C11orf44Q8N8P7 122 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 ERGIC1Q969X5 290 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 PRRC1Q96M27 445 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 SYT4Q9H2B2 425 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 FN3KRPQ9HA64 309 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 RNF7Q9UBF6 113 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 VPREB3Q9UKI3 123 aa12.12□□□□□ -0.47
PNKP-218ENST00000625299 ANKRD61A6NGH8 418 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 IMPA2O14732 288 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 OR10H3O60404 316 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 IFNA14P01570 189 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 GYPAP02724 150 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 OPN1MWP04001 364 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 OPN1MW2P0DN77 364 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 OPN1MW3P0DN78 364 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 CD200P41217 278 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 GPR4P46093 362 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 RAD23AP54725 363 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 LSM6P62312 80 aaKnown RBP12.11□□□□□ -0.47
PNKP-218ENST00000625299 PRB3Q04118 309 aaPredicted RBP12.11□□□□□ -0.47
PNKP-218ENST00000625299 COX10Q12887 443 aa12.11□□□□□ -0.47
PNKP-218ENST00000625299 KRR1Q13601 381 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms