RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 IGKV3-11P04433 115 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 POLR2HP52434 150 aaKnown RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 MFAP5Q13361 173 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 C11orf87Q6NUJ2 197 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 NUP54Q7Z3B4 507 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 INO80EQ8NBZ0 244 aaPredicted RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 OR6K3Q8NGY3 331 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF519Q8TB69 540 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 TMED6Q8WW62 240 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 DCUN1D4Q92564 292 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF304Q9HCX3 659 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 PCDHB10Q9UN67 800 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 CPED1A4D0V7 1026 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 DISC1C4P0D8 188 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 PHYHO14832 338 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 SLC6A8P48029 635 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ABHD12BQ7Z5M8 362 aaPredicted RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 OR5M8Q8NGP6 311 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ASB17Q8WXJ9 295 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 DAZLQ92904 295 aaKnown RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF775Q96BV0 537 aaPredicted RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 TSNAXQ99598 290 aaKnown RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ST6GALNAC5Q9BVH7 336 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 R4GMQ9 66 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 THADAQ6YHU6 1953 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 MYO7BQ6PIF6 2116 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 TLCD2A6NGC4 264 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 RAB27BO00194 218 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF735P0CB33 412 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 RPA2P15927 270 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 SLC26A5P58743 744 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 UNC119Q13432 240 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 TEX30Q5JUR7 227 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 JMJD6Q6NYC1 403 aaPredicted RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 TSTD1Q8NFU3 115 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 LIPHQ8WWY8 451 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 PARP12Q9H0J9 701 aaKnown RBP12.54□□□□□ -0.4
COL6A1-207ENST00000612273 WBP1LQ9NX94 342 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 KCNK7Q9Y2U2 307 aa12.54□□□□□ -0.4
COL6A1-207ENST00000612273 OR6C65A6NJZ3 312 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 ALG1L2C9J202 215 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 GLI4P10075 376 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 BCKDHBP21953 392 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 BDKRB2P30411 391 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 SERPINF1P36955 418 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 RPL35P42766 123 aaKnown RBP12.53□□□□□ -0.4
COL6A1-207ENST00000612273 EMP2P54851 167 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 ELAVL1Q15717 326 aaKnown RBP12.53□□□□□ -0.4
COL6A1-207ENST00000612273 KLHL24Q6TFL4 600 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 TMEM229BQ8NBD8 167 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 ELP5Q8TE02 316 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 SLC25A21Q9BQT8 299 aaPredicted RBP12.53□□□□□ -0.4
COL6A1-207ENST00000612273 C12orf10Q9HB07 376 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 KLRF1Q9NZS2 232 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 RNF222A6NCQ9 220 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 C2CD4DB7Z1M9 353 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF208O43345 1280 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 GIMD1P0DJR0 217 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 VSIG8P0DPA2 414 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 PRKACAP17612 351 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 KLK2P20151 261 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 GABRA4P48169 554 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 FAM122CQ6P4D5 195 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 C11orf40Q8WZ69 217 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 G6PC2Q9NQR9 355 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 CSAG2Q9Y5P2 127 aa12.53□□□□□ -0.4
COL6A1-207ENST00000612273 SOCS1O15524 211 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 HCKP08631 526 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 MGMTP16455 207 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 CD38P28907 300 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 CRABP1P29762 137 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 MECP2P51608 486 aaKnown RBP12.52□□□□□ -0.4
COL6A1-207ENST00000612273 SRSF3P84103 164 aaKnown RBP12.52□□□□□ -0.4
COL6A1-207ENST00000612273 ARFRP1Q13795 201 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 GUCA2BQ16661 112 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 FAM166AQ6J272 317 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 OVCH2Q7RTZ1 564 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 CBLN2Q8IUK8 224 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 SLAMF6Q96DU3 332 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF578Q96N58 590 aaPredicted RBP12.52□□□□□ -0.4
COL6A1-207ENST00000612273 ACKR4Q9NPB9 350 aa12.52□□□□□ -0.4
COL6A1-207ENST00000612273 RPH3AQ9Y2J0 694 aaPredicted RBP12.52□□□□□ -0.4
COL6A1-207ENST00000612273 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 C9orf170A2RU37 121 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 MS4A18H0YCH9 400 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 KNG1P01042 644 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 IGFBP4P22692 258 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 FOXF1Q12946 379 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 SNTB1Q13884 538 aaKnown RBP12.52□□□□□ -0.41
COL6A1-207ENST00000612273 MS4A18Q3C1V0 323 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 CLVS2Q5SYC1 327 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 DNM1P46Q6ZS02 220 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 GRINAQ7Z429 371 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 NAXDQ8IW45 347 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 PAQR4Q8N4S7 273 aaPredicted RBP12.52□□□□□ -0.41
COL6A1-207ENST00000612273 OR10R2Q8NGX6 335 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 MARC2Q969Z3 335 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 TWSG1Q9GZX9 223 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 CA14Q9ULX7 337 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 OR14I1A6ND48 311 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms