RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CTNSO60931 367 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 CDH16O75309 829 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 GOT2P00505 430 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 IGKV3-11P04433 115 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 H1F0P07305 194 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 TROVE2P10155 538 aaKnown RBP eCLIP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF17P17021 662 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 SYT1P21579 422 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 PRKACBP22694 351 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 CPN2P22792 545 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RPL4P36578 427 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 PTGDSP41222 190 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NKX2-1P43699 371 aaPredicted RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RFX3P48380 749 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NPY2RP49146 381 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RAB38P57729 211 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 BTN3A2P78410 334 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 PNOCQ13519 176 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 DPYSL3Q14195 570 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 SPHARQ15513 63 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NSUN5P1Q3KNT7 163 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 TEX44Q53QW1 395 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 LIPKQ5VXJ0 399 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RAET1LQ5VY80 246 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF470Q6ECI4 717 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR5M10Q6IEU7 315 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF620Q6ZNG0 422 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF771Q7L3S4 317 aaPredicted RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 SSX8Q7RTT4 187 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NUFIP2Q7Z417 695 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 VSTM4Q8IW00 320 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 WDFY1Q8IWB7 410 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 PQLC3Q8N755 202 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 CEP112Q8N8E3 955 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR2AK2Q8NG84 335 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR5M1Q8NGP8 315 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR13J1Q8NGT2 312 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 FGFBP3Q8TAT2 258 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NELFBQ8WX92 580 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 HAVCR1Q96D42 359 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 MRPL53Q96EL3 112 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 VSTM2LQ96N03 204 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RCHY1Q96PM5 261 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 CSF3RQ99062 836 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 NDUFAF3Q9BU61 184 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 FUNDC2Q9BWH2 189 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 TPK1Q9H3S4 243 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 C5orf66Q9H5L9 145 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 AUNIPQ9H7T9 357 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RNF121Q9H920 327 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ONECUT1Q9UBC0 465 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 IFT52Q9Y366 437 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF337Q9Y3M9 751 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 HEY1Q9Y5J3 304 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 DYNC1H1Q14204 4646 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 A0A087WUV0 522 aaPredicted RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 IQANK1A0A1B0GTG1 560 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 CCDC162PA2VCL2 907 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 BTBD17A6NE02 478 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR5H1A6NKK0 313 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 HSBP1L1C9JCN9 74 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 TXNDC12O95881 172 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 LGI1O95970 557 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 KRT6AP02538 564 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR4A8P0C604 315 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR8G3PP0DMU2 310 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 IGHV4-38-2P0DP08 117 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 CDH1P12830 882 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 UCHL3P15374 230 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 COL8A2P25067 703 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 NDUFA8P51970 172 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 CRIP2P52943 208 aaPredicted RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 LCN2P80188 198 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF415Q09FC8 603 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 PJVKQ0ZLH3 352 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 SLAMF1Q13291 335 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 EBPQ15125 230 aaKnown RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 RBMY1FQ15415 496 aaKnown RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 DEFB112Q30KQ8 113 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 PYHIN1Q6K0P9 492 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 DGAT2L6Q6ZPD8 337 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 GOLGA7Q7Z5G4 137 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 P2RY8Q86VZ1 359 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 PLCZ1Q86YW0 608 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 MMD2Q8IY49 270 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 CCDC36Q8IYA8 594 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 RIBC1Q8N443 379 aaPredicted RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 DEFB108BQ8NET1 73 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 SDR9C7Q8NEX9 313 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR5D13Q8NGL4 314 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR6M1Q8NGM8 313 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 OR4L1Q8NH43 312 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 FAM110BQ8TC76 370 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 NT5CQ8TCD5 201 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 ADAMTS16Q8TE57 1224 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 PPWD1Q96BP3 646 aaKnown RBP3.53□□□□□ -1.84
LINC00540-201ENST00000611481 S1PR3Q99500 378 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 BPIFA3Q9BQP9 254 aa3.53□□□□□ -1.84
LINC00540-201ENST00000611481 CHRDL1Q9BU40 450 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms