RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 SPRY3O43610 288 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 LY6G6DO95868 133 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 IGFBP5P24593 272 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 HSD11B1P28845 292 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 MPV17P39210 176 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 RIPPLY3P57055 190 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 GRB2P62993 217 aaKnown RBP16.54■□□□□ 0.24
UPF1-212ENST00000601689 LCN1P1Q5VSP4 162 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 CXXC5Q7LFL8 322 aaKnown RBP16.54■□□□□ 0.24
UPF1-212ENST00000601689 CPOQ8IVL8 374 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 MAPK1IP1LQ8NDC0 245 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 HAVCR1Q96D42 359 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 SLAMF6Q96DU3 332 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 ELMOD3Q96FG2 381 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 ZNF799Q96GE5 643 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 SMR3AQ99954 134 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 TOR3AQ9H497 397 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 MED20Q9H944 212 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 WDR76Q9H967 626 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 PTTG3PQ9NZH4 202 aa16.54■□□□□ 0.24
UPF1-212ENST00000601689 PURGQ9UJV8 347 aaKnown RBP16.54■□□□□ 0.24
UPF1-212ENST00000601689 GIFP27352 417 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 TMEM33P57088 247 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 CCL8P80075 99 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 SLC3A1Q07837 685 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 PSG7Q13046 419 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 EIF2B1Q14232 305 aaKnown RBP16.53■□□□□ 0.24
UPF1-212ENST00000601689 TSTQ16762 297 aaKnown RBP16.53■□□□□ 0.24
UPF1-212ENST00000601689 PCK2Q16822 640 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 HFEQ30201 348 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 TMEM236Q5W0B7 351 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 KDM4DQ6B0I6 523 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 DRAM2Q6UX65 266 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.53■□□□□ 0.24
UPF1-212ENST00000601689 MAP6Q96JE9 813 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 ZNF582Q96NG8 517 aaPredicted RBP16.53■□□□□ 0.24
UPF1-212ENST00000601689 KCNJ15Q99712 375 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 C1QTNF5Q9BXJ0 243 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 BPESC1Q9GZL8 116 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 DDX28Q9NUL7 540 aaKnown RBP16.53■□□□□ 0.24
UPF1-212ENST00000601689 OAZ3Q9UMX2 235 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 CR1P17927 2039 aa16.53■□□□□ 0.24
UPF1-212ENST00000601689 TLX2O43763 284 aaPredicted RBP16.52■□□□□ 0.24
UPF1-212ENST00000601689 HPXP02790 462 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 ACSM4P0C7M7 580 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 TNFRSF1AP19438 455 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 KITLGP21583 273 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 RPS27P42677 84 aaKnown RBP16.52■□□□□ 0.24
UPF1-212ENST00000601689 MAGEB1P43366 347 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 GPR6P46095 362 aaPredicted RBP16.52■□□□□ 0.24
UPF1-212ENST00000601689 GZMKP49863 264 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 MMP15P51511 669 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 CHN2P52757 468 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 LINC01590Q5TEZ4 76 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 FBXW12Q6X9E4 464 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 RHOUQ7L0Q8 258 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 PEG10Q86TG7 708 aaKnown RBP16.52■□□□□ 0.24
UPF1-212ENST00000601689 ZNF454Q8N9F8 522 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 STMN2Q93045 179 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 TIMD4Q96H15 378 aa16.52■□□□□ 0.24
UPF1-212ENST00000601689 NOP16Q9Y3C1 178 aaKnown RBP16.52■□□□□ 0.24
UPF1-212ENST00000601689 IGHV1-69-2A0A0G2JMI3 117 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 VWC2LB2RUY7 222 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 DBPQ10586 325 aaPredicted RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 TMEM249Q2WGJ8 235 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 Q71RC1 249 aaPredicted RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 PGAP1Q75T13 922 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 MRPL21Q7Z2W9 205 aaKnown RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 DPY19L4Q7Z388 723 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 ZNF283Q8N7M2 679 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 ZNRF4Q8WWF5 429 aa16.51■□□□□ 0.23
UPF1-212ENST00000601689 ZMYND19Q96E35 227 aaPredicted RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 PNRC2Q9NPJ4 139 aaKnown RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.51■□□□□ 0.23
UPF1-212ENST00000601689 SAC3D1A6NKF1 404 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 PPIHO43447 177 aaKnown RBP16.5■□□□□ 0.23
UPF1-212ENST00000601689 IGHV1-46P01743 117 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 LYNP07948 512 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 ADH4P08319 380 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 H2BFMP0C1H6 154 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 CRYBB2P43320 205 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 RAD23AP54725 363 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 TNFAIP6P98066 277 aaPredicted RBP16.5■□□□□ 0.23
UPF1-212ENST00000601689 APOFQ13790 326 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 CYB5R2Q6BCY4 276 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 LYPD4Q6UWN0 246 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 COLCA1Q6ZS62 124 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 USP51Q70EK9 711 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 OR2Z1Q8NG97 314 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 OR13G1Q8NGZ3 307 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 THEM6Q8WUY1 208 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 OPA3Q9H6K4 179 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 MARCH7Q9H992 704 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 MSL2Q9HCI7 577 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 LAMP5Q9UJQ1 280 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 TMEM14AQ9Y6G1 99 aa16.5■□□□□ 0.23
UPF1-212ENST00000601689 SLC22A31A6NKX4 558 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 CLDN25C9JDP6 229 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 CD5LO43866 347 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 CDC14BO60729 498 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms