RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZNF81P51508 661 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 ZMAT1Q5H9K5 638 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 KDM4DQ6B0I6 523 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 TMEM154Q6P9G4 183 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 TIGD4Q8IY51 512 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF511Q8NB15 262 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 LRTOMTQ8WZ04 291 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 HAVCR1Q96D42 359 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 POM121Q96HA1 1249 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 PITX2Q99697 317 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 CDADC1Q9BWV3 514 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 MED20Q9H944 212 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 KIF17Q9P2E2 1029 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 LYNX1G3V0Z9 82 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 IGHV4-31P0DP07 118 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 LYNX1P0DP58 116 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 PAICSP22234 425 aaKnown RBP13.72□□□□□ -0.21
TRIM28-213ENST00000598355 POU1F1P28069 291 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 CRISP1P54107 249 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 ESRRGP62508 458 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 CCL8P80075 99 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 CDK5R2Q13319 367 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 C6orf52Q5T4I8 152 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 Q6ZR03 302 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 DCXRQ7Z4W1 244 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 OR6K6Q8NGW6 343 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 DIRC2Q96SL1 478 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF275Q9NSD4 429 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-213ENST00000598355 TMEFF2Q9UIK5 374 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-213ENST00000598355 ZDHHC8Q9ULC8 765 aa13.72□□□□□ -0.21
TRIM28-213ENST00000598355 PLSCR5A0PG75 271 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 G3V2T6 193 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 H3BNX3 289 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 M0R135 149 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 EBAG9O00559 213 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 ANOS1P23352 680 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 COL8A2P25067 703 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 CRYBB2P43320 205 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 PPP2R2BQ00005 443 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 GGTLC2Q14390 218 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 CARTPTQ16568 116 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 TMEM236Q5W0B7 351 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 RHOUQ7L0Q8 258 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 AMIGO2Q86SJ2 522 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 ZDHHC13Q8IUH4 622 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 OR5L1Q8NGL2 311 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 CMBLQ96DG6 245 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF799Q96GE5 643 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 CENPNQ96H22 339 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-213ENST00000598355 C1orf159Q96HA4 380 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 INTS14Q96SY0 518 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 SAP30LQ9HAJ7 183 aa13.71□□□□□ -0.21
TRIM28-213ENST00000598355 ZAR1LA6NP61 321 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 IQCF6A8MYZ5 107 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF878C9JN71 531 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 INAFM1C9JVW0 142 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 PRR23D1E9PI22 279 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF593O00488 134 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 TIMM8AO60220 97 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 SPARCP09486 303 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 PRR23D2P0DMB1 279 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 GSTT1P30711 240 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 TMEM33P57088 247 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 EFNB1P98172 346 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 KPNB1Q14974 876 aaKnown RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 PTGES3Q15185 160 aaKnown RBP13.7□□□□□ -0.22
TRIM28-213ENST00000598355 KRTAP21-3Q3LHN1 58 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 SLC35D3Q5M8T2 416 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 PLBD1Q6P4A8 553 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 RNF133Q8WVZ7 376 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 HPS1Q92902 700 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 SLAMF6Q96DU3 332 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 MSL2Q9HCI7 577 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 KRT84Q9NSB2 600 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 PTTG3PQ9NZH4 202 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 OAZ3Q9UMX2 235 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 JMJD1CQ15652 2540 aa13.7□□□□□ -0.22
TRIM28-213ENST00000598355 IGHV1-69-2A0A0G2JMI3 117 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 F5H5K5 113 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 MITFO75030 526 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-213ENST00000598355 EPHA2P29317 976 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 GZMKP49863 264 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 CHN2P52757 468 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 TPTEP56180 551 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 HLXQ14774 488 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-213ENST00000598355 TRIP10Q15642 601 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 SLX4IPQ5VYV7 408 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 C12orf73Q69YU5 71 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 ZFP1Q6P2D0 407 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 DRAM2Q6UX65 266 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 USP51Q70EK9 711 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 DPY19L4Q7Z388 723 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 NAA40Q86UY6 237 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 CPOQ8IVL8 374 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 BBS1Q8NFJ9 593 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 OR6N2Q8NGY6 317 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 PYDC1Q8WXC3 89 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 SPTSSAQ969W0 71 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 KCNJ15Q99712 375 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 SOX7Q9BT81 388 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms