RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C12orf73Q69YU5 71 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 COLCA1Q6ZS62 124 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 DPY19L4Q7Z388 723 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 UBASH3BQ8TF42 649 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 SPTSSAQ969W0 71 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 SLAMF6Q96DU3 332 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 ZNF799Q96GE5 643 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 PIMREGQ9BSJ6 248 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 C1QTNF5Q9BXJ0 243 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 GABARAPL3Q9BY60 117 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 S100A14Q9HCY8 104 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 PTTG3PQ9NZH4 202 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 CGGBP1Q9UFW8 167 aaPredicted RBP12.43□□□□□ -0.42
VRK3-206ENST00000594090 PURGQ9UJV8 347 aaKnown RBP12.43□□□□□ -0.42
VRK3-206ENST00000594090 MAP1AP78559 2803 aaPredicted RBP12.43□□□□□ -0.42
VRK3-206ENST00000594090 PLSCR5A0PG75 271 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 ZSCAN5BA6NJL1 495 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 VWC2LB2RUY7 222 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 M0R129 80 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 HPXP02790 462 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 OTX1P32242 354 aaPredicted RBP12.42□□□□□ -0.42
VRK3-206ENST00000594090 ZNF81P51508 661 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 RPS7P62081 194 aaKnown RBP12.42□□□□□ -0.42
VRK3-206ENST00000594090 APOFQ13790 326 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 EIF2B1Q14232 305 aaKnown RBP12.42□□□□□ -0.42
VRK3-206ENST00000594090 PCGF3Q3KNV8 242 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 ZNF786Q8N393 782 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 OR5L1Q8NGL2 311 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 CMBLQ96DG6 245 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 COPS4Q9BT78 406 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 RIBC2Q9H4K1 309 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 NKIRAS2Q9NYR9 191 aa12.42□□□□□ -0.42
VRK3-206ENST00000594090 CCDC182A6NF36 153 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 LYNX1G3V0Z9 82 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 EI24O14681 340 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 ALPLP05186 524 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 LYNX1P0DP58 116 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 RAC2P15153 192 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 KITLGP21583 273 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 POLR2IP36954 125 aaKnown RBP12.41□□□□□ -0.42
VRK3-206ENST00000594090 LIPAP38571 399 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 NR4A2P43354 598 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 TPTEP56180 551 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 HLXQ14774 488 aaPredicted RBP12.41□□□□□ -0.42
VRK3-206ENST00000594090 ZMAT1Q5H9K5 638 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 CLEC9AQ6UXN8 241 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 FBXW12Q6X9E4 464 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 SHFQ7M4L6 423 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 NAA40Q86UY6 237 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 HAVCR1Q96D42 359 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 KCNJ15Q99712 375 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 ABHD6Q9BV23 337 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 BPESC1Q9GZL8 116 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 CYSLTR2Q9NS75 346 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 CENPMQ9NSP4 180 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 USE1Q9NZ43 259 aa12.41□□□□□ -0.42
VRK3-206ENST00000594090 SPRY3O43610 288 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 TLX2O43763 284 aaPredicted RBP12.4□□□□□ -0.42
VRK3-206ENST00000594090 LY6G6DO95868 133 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 IGHV1-46P01743 117 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 LCATP04180 440 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 GIFP27352 417 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 NAA10P41227 235 aaPredicted RBP12.4□□□□□ -0.42
VRK3-206ENST00000594090 SLC6A9P48067 706 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 GRB2P62993 217 aaKnown RBP12.4□□□□□ -0.42
VRK3-206ENST00000594090 CCL8P80075 99 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 EFNB1P98172 346 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 LOXL1Q08397 574 aaPredicted RBP12.4□□□□□ -0.42
VRK3-206ENST00000594090 TAF13Q15543 124 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 FAM209AQ5JX71 171 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 DRAM2Q6UX65 266 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 SPATC1Q76KD6 591 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 PQLC1Q8N2U9 271 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 TCEANCQ8N8B7 351 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 OTOSQ8NHW6 89 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 TMEM163Q8TC26 289 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 RNF133Q8WVZ7 376 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 AMELYQ99218 206 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 MSL2Q9HCI7 577 aa12.4□□□□□ -0.42
VRK3-206ENST00000594090 HEXAP06865 529 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 ADH4P08319 380 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 ACHEP22303 614 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 USF1P22415 310 aaPredicted RBP12.39□□□□□ -0.43
VRK3-206ENST00000594090 ANOS1P23352 680 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 COL8A2P25067 703 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 SLC15A1P46059 708 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 ALDH3A2P51648 485 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 PRKXP51817 358 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 MRPS11P82912 194 aaKnown RBP12.39□□□□□ -0.43
VRK3-206ENST00000594090 KRTAP1-1Q07627 177 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 RIN1Q13671 783 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 TSTQ16762 297 aaKnown RBP12.39□□□□□ -0.43
VRK3-206ENST00000594090 SNAI3Q3KNW1 292 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 LCN1P1Q5VSP4 162 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 NXNL2Q5VZ03 156 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 RHOUQ7L0Q8 258 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 BCDIN3DQ7Z5W3 292 aaKnown RBP12.39□□□□□ -0.43
VRK3-206ENST00000594090 CBR4Q8N4T8 237 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 ZNF454Q8N9F8 522 aa12.39□□□□□ -0.43
VRK3-206ENST00000594090 ZNF540Q8NDQ6 660 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms