RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TRAM2	Q15035	370 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	QPRT	Q15274	297 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF77	Q15935	545 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	UPP1	Q16831	310 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	HLA-B	Q31612	363 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	PAN3	Q58A45	887 aa	Known RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	MS4A13	Q5J8X5	152 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	SAMD4B	Q5PRF9	694 aa	Known RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	DCST2	Q5T1A1	773 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	LINC00242	Q5T6M2	205 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	SYT6	Q5T7P8	510 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF57	Q68EA5	555 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	PWWP2B	Q6NUJ5	590 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	LCLAT1	Q6UWP7	414 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	FRRS1	Q6ZNA5	592 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	TIFAB	Q6ZNK6	161 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	SLC26A11	Q86WA9	606 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	IFNE	Q86WN2	208 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	DHFR2	Q86XF0	187 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	HIPK1	Q86Z02	1210 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	BLID	Q8IZY5	108 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	C8orf59	Q8N0T1	100 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	GABRG1	Q8N1C3	465 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	OR2L13	Q8N349	312 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	C9orf62	Q8N4C0	152 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	C15orf54	Q8N8G6	183 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	OR9A4	Q8NGU2	314 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF461	Q8TAF7	563 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF564	Q8TBZ8	553 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	MARCH1	Q8TCQ1	289 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	SPPL2A	Q8TCT8	520 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	TOMM40L	Q969M1	308 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	RCN3	Q96D15	328 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	NUS1	Q96E22	293 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	CSPG4P5	Q96PW8	444 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	HSD17B14	Q9BPX1	270 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	MAPKAP1	Q9BPZ7	522 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	MRPL37	Q9BZE1	423 aa	Known RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	DCSTAMP	Q9H295	470 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	TDRD3	Q9H7E2	651 aa	Known RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	AGPAT4	Q9NRZ5	378 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	EXD2	Q9NVH0	621 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	IMPAD1	Q9NX62	359 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ELOVL2	Q9NXB9	296 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	USE1	Q9NZ43	259 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ADA2	Q9NZK5	511 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	WRAP73	Q9P2S5	460 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	THAP10	Q9P2Z0	257 aa	Predicted RBP	4	□□□□□ -1.77
SS18-223	ENST00000583595	PHF11	Q9UIL8	331 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ING4	Q9UNL4	249 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	ERVW-1	Q9UQF0	538 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	PEAK1	Q9H792	1746 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	PCM1	Q15154	2024 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	FLT4	P35916	1363 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	USP54	Q70EL1	1684 aa		4	□□□□□ -1.77
SS18-223	ENST00000583595	RGPD3	A6NKT7	1758 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	RGPD4	Q7Z3J3	1758 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	TRGV8	A0A0C4DH27	118 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	OR6C74	A6NCV1	312 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	FRG2C	A6NGY1	282 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	PP2D1	A8MPX8	630 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ARHGEF33	A8MVX0	844 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	EFCAB9	A8MZ26	197 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595		K7EQG2	157 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	NDUFS8	O00217	210 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	LAT	O43561	262 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SH3BGRL	O75368	114 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	TMEM50A	O95807	157 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MB	P02144	154 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	PCCA	P05165	728 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF806	P0C7X5	589 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	UMPS	P11172	480 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	HSD17B1	P14061	328 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SDC1	P18827	310 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	OGN	P20774	298 aa	Known RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MAG	P20916	626 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MSR1	P21757	451 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	RPS3	P23396	243 aa	Known RBP eCLIP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ELK4	P28324	431 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SHMT2	P34897	504 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	GPX4	P36969	197 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	UQCRFS1	P47985	274 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ARPP19	P56211	112 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	RPS14	P62263	151 aa	Known RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SNRPD2	P62316	118 aa	Known RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	GTF2B	Q00403	316 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	DEFA6	Q01524	100 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SLAMF1	Q13291	335 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	IL18R1	Q13478	541 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ASAH1	Q13510	395 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	GRB7	Q14451	532 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	RNF212	Q495C1	297 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	NKAIN1	Q4KMZ8	207 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	C2CD6	Q53TS8	623 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	CDKL4	Q5MAI5	379 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MUC21	Q5SSG8	566 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SAPCD1	Q5SSQ6	148 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	THEM4	Q5T1C6	240 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	KDM4D	Q6B0I6	523 aa		3.99	□□□□□ -1.77

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