RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CLEC12AQ5QGZ9 265 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 SFRP4Q6FHJ7 346 aaPredicted RBP10.5□□□□□ -0.73
SS18-219ENST00000581570 PATL1Q86TB9 770 aaKnown RBP10.5□□□□□ -0.73
SS18-219ENST00000581570 IGFN1Q86VF2 1251 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 C11orf44Q8N8P7 122 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 OR1F12Q8NHA8 337 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 TAMM41Q96BW9 452 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 UFSP2Q9NUQ7 469 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 ZNRD1Q9P1U0 126 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 RIMS3Q9UJD0 308 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 MED31Q9Y3C7 131 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 TET2Q6N021 2002 aaPredicted RBP10.5□□□□□ -0.73
SS18-219ENST00000581570 OR6C6A6NF89 314 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 H7C1C5 153 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 LGALS8O00214 317 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 XPNPEP2O43895 674 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 DBHP09172 617 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 LCN6P62502 163 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 HOXA4Q00056 320 aaPredicted RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 DBPQ10586 325 aaPredicted RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 INTS11Q5TA45 600 aaKnown RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 DLEU7Q6UYE1 221 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 BTN2A1Q7KYR7 527 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 CELF2-AS1Q8N7Q2 184 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 BOLLQ8N9W6 283 aaKnown RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 AENQ8WTP8 325 aaKnown RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 NPRL2Q8WTW4 380 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 APOBEC3DQ96AK3 386 aaPredicted RBP10.49□□□□□ -0.73
SS18-219ENST00000581570 SEMA6AQ9H2E6 1030 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 PPA2Q9H2U2 334 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 CNTD2Q9H8S5 307 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 SMURF1Q9HCE7 757 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 RNF7Q9UBF6 113 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 FOXJ3Q9UPW0 622 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 SIGLEC9Q9Y336 463 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 SH3GLB1Q9Y371 365 aa10.49□□□□□ -0.73
SS18-219ENST00000581570 A0A1B0GWJ7 208 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 RNASEK-C17orf49H0YIS7 233 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 NDUFA2O43678 99 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 OR10H3O60404 316 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 OR5F1O95221 314 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 CD200P41217 278 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 RAD23AP54725 363 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 AQP6Q13520 282 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 PIN1Q13526 163 aaPredicted RBP10.48□□□□□ -0.73
SS18-219ENST00000581570 OR8B8Q15620 311 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 MPPED2Q15777 294 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 CCDC92Q53HC0 331 aaPredicted RBP10.48□□□□□ -0.73
SS18-219ENST00000581570 PRAMEF6Q5VXH4 476 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 OTPQ5XKR4 325 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 EPGNQ6UW88 154 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 VMO1Q7Z5L0 202 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 LRRC75AQ8NAA5 344 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 LRRC8CQ8TDW0 803 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 RASSF5Q8WWW0 418 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 CFHR4Q92496 578 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 ITPKCQ96DU7 683 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 ZNF583Q96ND8 569 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 ECSITQ9BQ95 431 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 HCAR1Q9BXC0 346 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 WDR76Q9H967 626 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 KPTNQ9Y664 436 aa10.48□□□□□ -0.73
SS18-219ENST00000581570 TRAV38-1A0A0B4J264 116 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 A0A1B0GVI7 797 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 PLXNB1O43157 2135 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 SHOX2O60902 331 aaPredicted RBP10.47□□□□□ -0.73
SS18-219ENST00000581570 ECDO95905 644 aaPredicted RBP10.47□□□□□ -0.73
SS18-219ENST00000581570 IFI30P13284 250 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 TNFRSF1BP20333 461 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 EFNB2P52799 333 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 MTPNP58546 118 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 SELPLGQ14242 412 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 CDONQ4KMG0 1287 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 AGKQ53H12 422 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 TNFAIP8L3Q5GJ75 292 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 BEND6Q5SZJ8 279 aaPredicted RBP10.47□□□□□ -0.73
SS18-219ENST00000581570 C11orf88Q6PI97 169 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 C1orf122Q6ZSJ8 110 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 MICU2Q8IYU8 434 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 SPERTQ8NA61 448 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 OR51A7Q8NH64 312 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 OR5R1Q8NH85 324 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 ZBTB9Q96C00 473 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 BPIFA2Q96DR5 249 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 POLR2J2Q9GZM3 115 aaKnown RBP10.47□□□□□ -0.73
SS18-219ENST00000581570 POLR2J3Q9H1A7 115 aaKnown RBP10.47□□□□□ -0.73
SS18-219ENST00000581570 TOR3AQ9H497 397 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 FN3KRPQ9HA64 309 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 TRIM36Q9NQ86 728 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 ATPIF1Q9UII2 106 aa10.47□□□□□ -0.73
SS18-219ENST00000581570 TRAV27A0A087WT01 109 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 A0A1W2PRD5 423 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 A0A1W2PRF3 423 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 A0A1W2PRM7 423 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 HTR3EA5X5Y0 456 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 DVL1O14640 695 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 RER1O15258 196 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 POLR3GO15318 223 aaPredicted RBP10.46□□□□□ -0.73
SS18-219ENST00000581570 GYPAP02724 150 aa10.46□□□□□ -0.73
SS18-219ENST00000581570 EEF1B2P24534 225 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms